Gene : Seita.2G188200 S. italica v2.2
Defline:  (1 of 2) PTHR10788//PTHR10788:SF36 - TREHALOSE-6-PHOSPHATE SYNTHASE Genomic Order:  1882
Name:  ? Seita.2G188200 Secondary Identifier:  ? PAC:32722453
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G188200 0.5kb upstream 0.5kb upstream 2753 true scaffold_2: 28387040-28389792 Setaria italica
Seita.2G188200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 28387040-28387539 Setaria italica
Seita.2G188200 0.5kb downstream 0.5kb downstream 2753 true scaffold_2: 28387540-28390292 Setaria italica
Seita.2G188200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 28389793-28390292 Setaria italica
Seita.2G188200 1.0kb upstream 1.0kb upstream 3253 true scaffold_2: 28386540-28389792 Setaria italica
Seita.2G188200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 28386540-28387539 Setaria italica
Seita.2G188200 1.0kb downstream 1.0kb downstream 3253 true scaffold_2: 28387540-28390792 Setaria italica
Seita.2G188200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 28389793-28390792 Setaria italica
Seita.2G188200 2.0kb upstream 2.0kb upstream 4253 true scaffold_2: 28385540-28389792 Setaria italica
Seita.2G188200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 28385540-28387539 Setaria italica
Seita.2G188200 2.0kb downstream 2.0kb downstream 4253 true scaffold_2: 28387540-28391792 Setaria italica
Seita.2G188200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 28389793-28391792 Setaria italica
Seita.2G188200 5.0kb upstream 5.0kb upstream 7253 true scaffold_2: 28382540-28389792 Setaria italica
Seita.2G188200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 28382540-28387539 Setaria italica
Seita.2G188200 5.0kb downstream 5.0kb downstream 7253 true scaffold_2: 28387540-28394792 Setaria italica
Seita.2G188200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 28389793-28394792 Setaria italica
Seita.2G188200 10.0kb upstream 10.0kb upstream 12253 true scaffold_2: 28377540-28389792 Setaria italica
Seita.2G188200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 28377540-28387539 Setaria italica
Seita.2G188200 10.0kb downstream 10.0kb downstream 12253 true scaffold_2: 28387540-28399792 Setaria italica
Seita.2G188200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 28389793-28399792 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176205 5267 Panicoideae View MSA
124576786 5269 Grass View MSA
122042129 5273 Angiosperm View MSA
121351669 5274 Embryophyte View MSA
123427869 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 38.836     High  
cufflinks 2.447       Low
cufflinks 26.199     High  
cufflinks 34.196     High  
cufflinks 58.281     High High
cufflinks 3.695       Low
cufflinks 69.466     High High
cufflinks 24.747     High  
cufflinks 39.922     High  
cufflinks 23.403     High  
cufflinks 15.603     High  
cufflinks 2.046       Low
cufflinks 14.214     High  
cufflinks 34.318     High  
cufflinks 9.574        
cufflinks 61.024     High High
cufflinks 4.962       Low
cufflinks 18.264     High  
cufflinks 38.924     High  
cufflinks 3.172       Low

0 Strain