Gene : Seita.2G188700 S. italica v2.2
Defline:  (1 of 3) 1.3.5.1 - Succinate dehydrogenase (quinone) / Succinic dehydrogenase Genomic Order:  1887
Name:  ? Seita.2G188700 Secondary Identifier:  ? PAC:32719581
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-3781 Setaria italica pathologic  
Sitalica PWY-4302 Setaria italica pathologic  
Sitalica PWY-5464 Setaria italica pathologic  
Sitalica PWY-561 Setaria italica pathologic  
Sitalica PWY-5690 Setaria italica pathologic  
Sitalica PWY-7279 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G188700 0.5kb upstream 0.5kb upstream 1376 true scaffold_2: 28470712-28472087 Setaria italica
Seita.2G188700 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 28471588-28472087 Setaria italica
Seita.2G188700 0.5kb downstream 0.5kb downstream 1376 true scaffold_2: 28470212-28471587 Setaria italica
Seita.2G188700 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 28470212-28470711 Setaria italica
Seita.2G188700 1.0kb upstream 1.0kb upstream 1876 true scaffold_2: 28470712-28472587 Setaria italica
Seita.2G188700 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 28471588-28472587 Setaria italica
Seita.2G188700 1.0kb downstream 1.0kb downstream 1876 true scaffold_2: 28469712-28471587 Setaria italica
Seita.2G188700 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 28469712-28470711 Setaria italica
Seita.2G188700 2.0kb upstream 2.0kb upstream 2876 true scaffold_2: 28470712-28473587 Setaria italica
Seita.2G188700 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 28471588-28473587 Setaria italica
Seita.2G188700 2.0kb downstream 2.0kb downstream 2876 true scaffold_2: 28468712-28471587 Setaria italica
Seita.2G188700 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 28468712-28470711 Setaria italica
Seita.2G188700 5.0kb upstream 5.0kb upstream 5876 true scaffold_2: 28470712-28476587 Setaria italica
Seita.2G188700 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 28471588-28476587 Setaria italica
Seita.2G188700 5.0kb downstream 5.0kb downstream 5876 true scaffold_2: 28465712-28471587 Setaria italica
Seita.2G188700 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 28465712-28470711 Setaria italica
Seita.2G188700 10.0kb upstream 10.0kb upstream 10876 true scaffold_2: 28470712-28481587 Setaria italica
Seita.2G188700 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 28471588-28481587 Setaria italica
Seita.2G188700 10.0kb downstream 10.0kb downstream 10876 true scaffold_2: 28460712-28471587 Setaria italica
Seita.2G188700 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 28460712-28470711 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190340 5267 Panicoideae View MSA
124581738 5269 Grass View MSA
122049105 5273 Angiosperm View MSA
121351479 5274 Embryophyte View MSA
123424532 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.023     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.022     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain