Gene : Seita.2G188500 S. italica v2.2
Defline:  (1 of 1) PTHR12151:SF1 - PROTEIN SCO1 HOMOLOG 2, MITOCHONDRIAL Genomic Order:  1885
Name:  ? Seita.2G188500 Secondary Identifier:  ? PAC:32721178
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G188500 0.5kb upstream 0.5kb upstream 4893 true scaffold_2: 28463948-28468840 Setaria italica
Seita.2G188500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 28468341-28468840 Setaria italica
Seita.2G188500 0.5kb downstream 0.5kb downstream 4893 true scaffold_2: 28463448-28468340 Setaria italica
Seita.2G188500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 28463448-28463947 Setaria italica
Seita.2G188500 1.0kb upstream 1.0kb upstream 5393 true scaffold_2: 28463948-28469340 Setaria italica
Seita.2G188500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 28468341-28469340 Setaria italica
Seita.2G188500 1.0kb downstream 1.0kb downstream 5393 true scaffold_2: 28462948-28468340 Setaria italica
Seita.2G188500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 28462948-28463947 Setaria italica
Seita.2G188500 2.0kb upstream 2.0kb upstream 6393 true scaffold_2: 28463948-28470340 Setaria italica
Seita.2G188500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 28468341-28470340 Setaria italica
Seita.2G188500 2.0kb downstream 2.0kb downstream 6393 true scaffold_2: 28461948-28468340 Setaria italica
Seita.2G188500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 28461948-28463947 Setaria italica
Seita.2G188500 5.0kb upstream 5.0kb upstream 9393 true scaffold_2: 28463948-28473340 Setaria italica
Seita.2G188500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 28468341-28473340 Setaria italica
Seita.2G188500 5.0kb downstream 5.0kb downstream 9393 true scaffold_2: 28458948-28468340 Setaria italica
Seita.2G188500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 28458948-28463947 Setaria italica
Seita.2G188500 10.0kb upstream 10.0kb upstream 14393 true scaffold_2: 28463948-28478340 Setaria italica
Seita.2G188500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 28468341-28478340 Setaria italica
Seita.2G188500 10.0kb downstream 10.0kb downstream 14393 true scaffold_2: 28453948-28468340 Setaria italica
Seita.2G188500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 28453948-28463947 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189550 5267 Panicoideae View MSA
124579872 5269 Grass View MSA
122046621 5273 Angiosperm View MSA
121343822 5274 Embryophyte View MSA
123427619 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.004        
cufflinks 1.564        
cufflinks 0.569       Low
cufflinks 0.433       Low
cufflinks 0.545       Low
cufflinks 1.807        
cufflinks 0.63       Low
cufflinks 1.711        
cufflinks 1.286        
cufflinks 1.508        
cufflinks 1.458        
cufflinks 2.636       High
cufflinks 1.49        
cufflinks 1.212        
cufflinks 2.675       High
cufflinks 0.617       Low
cufflinks 2.724       High
cufflinks 1.531        
cufflinks 0.467       Low
cufflinks 2.201       High

0 Strain