Gene : Seita.2G193700 S. italica v2.2
Defline:  (1 of 5) PF11833 - Protein of unknown function (DUF3353) (DUF3353) Genomic Order:  1937
Name:  ? Seita.2G193700 Secondary Identifier:  ? PAC:32720774
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G193700 0.5kb upstream 0.5kb upstream 4260 true scaffold_2: 29003955-29008214 Setaria italica
Seita.2G193700 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 29003955-29004454 Setaria italica
Seita.2G193700 0.5kb downstream 0.5kb downstream 4260 true scaffold_2: 29004455-29008714 Setaria italica
Seita.2G193700 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 29008215-29008714 Setaria italica
Seita.2G193700 1.0kb upstream 1.0kb upstream 4760 true scaffold_2: 29003455-29008214 Setaria italica
Seita.2G193700 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 29003455-29004454 Setaria italica
Seita.2G193700 1.0kb downstream 1.0kb downstream 4760 true scaffold_2: 29004455-29009214 Setaria italica
Seita.2G193700 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 29008215-29009214 Setaria italica
Seita.2G193700 2.0kb upstream 2.0kb upstream 5760 true scaffold_2: 29002455-29008214 Setaria italica
Seita.2G193700 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 29002455-29004454 Setaria italica
Seita.2G193700 2.0kb downstream 2.0kb downstream 5760 true scaffold_2: 29004455-29010214 Setaria italica
Seita.2G193700 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 29008215-29010214 Setaria italica
Seita.2G193700 5.0kb upstream 5.0kb upstream 8760 true scaffold_2: 28999455-29008214 Setaria italica
Seita.2G193700 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 28999455-29004454 Setaria italica
Seita.2G193700 5.0kb downstream 5.0kb downstream 8760 true scaffold_2: 29004455-29013214 Setaria italica
Seita.2G193700 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 29008215-29013214 Setaria italica
Seita.2G193700 10.0kb upstream 10.0kb upstream 13760 true scaffold_2: 28994455-29008214 Setaria italica
Seita.2G193700 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 28994455-29004454 Setaria italica
Seita.2G193700 10.0kb downstream 10.0kb downstream 13760 true scaffold_2: 29004455-29018214 Setaria italica
Seita.2G193700 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 29008215-29018214 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197781 5267 Panicoideae View MSA
124577363 5269 Grass View MSA
122050900 5273 Angiosperm View MSA
121343809 5274 Embryophyte View MSA
123427732 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.677        
cufflinks 3.001        
cufflinks 2.064        
cufflinks 1.485       Low
cufflinks 4.948        
cufflinks 3.616        
cufflinks 8.36       High
cufflinks 11.292       High
cufflinks 15.062     High High
cufflinks 4.973        
cufflinks 3.596        
cufflinks 1.334       Low
cufflinks 2.151        
cufflinks 2.687        
cufflinks 1.825        
cufflinks 6.968       High
cufflinks 1.922        
cufflinks 2.588        
cufflinks 1.456       Low
cufflinks 1.754        

0 Strain