Gene : Seita.2G192000 S. italica v2.2
Defline:  (1 of 1) PF15491 - CST, telomere maintenance, complex subunit CTC1 (CTC1_2) Genomic Order:  1920
Name:  ? Seita.2G192000 Secondary Identifier:  ? PAC:32720828
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G192000 0.5kb upstream 0.5kb upstream 12208 true scaffold_2: 28768865-28781072 Setaria italica
Seita.2G192000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 28780573-28781072 Setaria italica
Seita.2G192000 0.5kb downstream 0.5kb downstream 12208 true scaffold_2: 28768365-28780572 Setaria italica
Seita.2G192000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 28768365-28768864 Setaria italica
Seita.2G192000 1.0kb upstream 1.0kb upstream 12708 true scaffold_2: 28768865-28781572 Setaria italica
Seita.2G192000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 28780573-28781572 Setaria italica
Seita.2G192000 1.0kb downstream 1.0kb downstream 12708 true scaffold_2: 28767865-28780572 Setaria italica
Seita.2G192000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 28767865-28768864 Setaria italica
Seita.2G192000 2.0kb upstream 2.0kb upstream 13708 true scaffold_2: 28768865-28782572 Setaria italica
Seita.2G192000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 28780573-28782572 Setaria italica
Seita.2G192000 2.0kb downstream 2.0kb downstream 13708 true scaffold_2: 28766865-28780572 Setaria italica
Seita.2G192000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 28766865-28768864 Setaria italica
Seita.2G192000 5.0kb upstream 5.0kb upstream 16708 true scaffold_2: 28768865-28785572 Setaria italica
Seita.2G192000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 28780573-28785572 Setaria italica
Seita.2G192000 5.0kb downstream 5.0kb downstream 16708 true scaffold_2: 28763865-28780572 Setaria italica
Seita.2G192000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 28763865-28768864 Setaria italica
Seita.2G192000 10.0kb upstream 10.0kb upstream 21708 true scaffold_2: 28768865-28790572 Setaria italica
Seita.2G192000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 28780573-28790572 Setaria italica
Seita.2G192000 10.0kb downstream 10.0kb downstream 21708 true scaffold_2: 28758865-28780572 Setaria italica
Seita.2G192000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 28758865-28768864 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190457 5267 Panicoideae View MSA
124587540 5269 Grass View MSA
122046572 5273 Angiosperm View MSA
121345821 5274 Embryophyte View MSA
123380273 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.158        
cufflinks 0.215        
cufflinks 0.149        
cufflinks 0.074     Low Low
cufflinks 0.11       Low
cufflinks 0.214        
cufflinks 0.22        
cufflinks 0.277        
cufflinks 0.224        
cufflinks 0.214     Low  
cufflinks 0.281        
cufflinks 0.211        
cufflinks 0.101     Low Low
cufflinks 0.178        
cufflinks 0.299       High
cufflinks 0.272        
cufflinks 0.263        
cufflinks 0.188        
cufflinks 0.064     Low Low
cufflinks 0.297       High

0 Strain