Gene : Seita.2G191900 S. italica v2.2
Defline:  (1 of 1) PTHR12297 - HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATED Genomic Order:  1919
Name:  ? Seita.2G191900 Secondary Identifier:  ? PAC:32723231
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G191900 0.5kb upstream 0.5kb upstream 3334 true scaffold_2: 28765142-28768475 Setaria italica
Seita.2G191900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 28765142-28765641 Setaria italica
Seita.2G191900 0.5kb downstream 0.5kb downstream 3334 true scaffold_2: 28765642-28768975 Setaria italica
Seita.2G191900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 28768476-28768975 Setaria italica
Seita.2G191900 1.0kb upstream 1.0kb upstream 3834 true scaffold_2: 28764642-28768475 Setaria italica
Seita.2G191900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 28764642-28765641 Setaria italica
Seita.2G191900 1.0kb downstream 1.0kb downstream 3834 true scaffold_2: 28765642-28769475 Setaria italica
Seita.2G191900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 28768476-28769475 Setaria italica
Seita.2G191900 2.0kb upstream 2.0kb upstream 4834 true scaffold_2: 28763642-28768475 Setaria italica
Seita.2G191900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 28763642-28765641 Setaria italica
Seita.2G191900 2.0kb downstream 2.0kb downstream 4834 true scaffold_2: 28765642-28770475 Setaria italica
Seita.2G191900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 28768476-28770475 Setaria italica
Seita.2G191900 5.0kb upstream 5.0kb upstream 7834 true scaffold_2: 28760642-28768475 Setaria italica
Seita.2G191900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 28760642-28765641 Setaria italica
Seita.2G191900 5.0kb downstream 5.0kb downstream 7834 true scaffold_2: 28765642-28773475 Setaria italica
Seita.2G191900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 28768476-28773475 Setaria italica
Seita.2G191900 10.0kb upstream 10.0kb upstream 12834 true scaffold_2: 28755642-28768475 Setaria italica
Seita.2G191900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 28755642-28765641 Setaria italica
Seita.2G191900 10.0kb downstream 10.0kb downstream 12834 true scaffold_2: 28765642-28778475 Setaria italica
Seita.2G191900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 28768476-28778475 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195796 5267 Panicoideae View MSA
124571605 5269 Grass View MSA
122045148 5273 Angiosperm View MSA
121347874 5274 Embryophyte View MSA
123423754 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.815        
cufflinks 5.67        
cufflinks 3.665       Low
cufflinks 4.912        
cufflinks 4.84        
cufflinks 6.766        
cufflinks 3.473       Low
cufflinks 7.899        
cufflinks 7.312        
cufflinks 9.851       High
cufflinks 4.608        
cufflinks 6.298        
cufflinks 10.067       High
cufflinks 4.779        
cufflinks 6.069        
cufflinks 3.059       Low
cufflinks 9.031       High
cufflinks 2.603       Low
cufflinks 5.392        
cufflinks 7.695        

0 Strain