Gene : Seita.2G279000 S. italica v2.2
Defline:  (1 of 1) PTHR10030:SF25 - ALPHA-L-FUCOSIDASE-RELATED Genomic Order:  2790
Name:  ? Seita.2G279000 Secondary Identifier:  ? PAC:32721093
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G279000 0.5kb upstream 0.5kb upstream 3161 true scaffold_2: 37661142-37664302 Setaria italica
Seita.2G279000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 37663803-37664302 Setaria italica
Seita.2G279000 0.5kb downstream 0.5kb downstream 3161 true scaffold_2: 37660642-37663802 Setaria italica
Seita.2G279000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 37660642-37661141 Setaria italica
Seita.2G279000 1.0kb upstream 1.0kb upstream 3661 true scaffold_2: 37661142-37664802 Setaria italica
Seita.2G279000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 37663803-37664802 Setaria italica
Seita.2G279000 1.0kb downstream 1.0kb downstream 3661 true scaffold_2: 37660142-37663802 Setaria italica
Seita.2G279000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 37660142-37661141 Setaria italica
Seita.2G279000 2.0kb upstream 2.0kb upstream 4661 true scaffold_2: 37661142-37665802 Setaria italica
Seita.2G279000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 37663803-37665802 Setaria italica
Seita.2G279000 2.0kb downstream 2.0kb downstream 4661 true scaffold_2: 37659142-37663802 Setaria italica
Seita.2G279000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 37659142-37661141 Setaria italica
Seita.2G279000 5.0kb upstream 5.0kb upstream 7661 true scaffold_2: 37661142-37668802 Setaria italica
Seita.2G279000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 37663803-37668802 Setaria italica
Seita.2G279000 5.0kb downstream 5.0kb downstream 7661 true scaffold_2: 37656142-37663802 Setaria italica
Seita.2G279000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 37656142-37661141 Setaria italica
Seita.2G279000 10.0kb upstream 10.0kb upstream 12661 true scaffold_2: 37661142-37673802 Setaria italica
Seita.2G279000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 37663803-37673802 Setaria italica
Seita.2G279000 10.0kb downstream 10.0kb downstream 12661 true scaffold_2: 37651142-37663802 Setaria italica
Seita.2G279000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 37651142-37661141 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186426 5267 Panicoideae View MSA
124584650 5269 Grass View MSA
122048937 5273 Angiosperm View MSA
121351387 5274 Embryophyte View MSA
123382147 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.603        
cufflinks 1.139        
cufflinks 0.145        
cufflinks 0.423        
cufflinks 0.614        
cufflinks 1.116        
cufflinks 0.76        
cufflinks 0.838        
cufflinks 0.928        
cufflinks 0.548        
cufflinks 0.422        
cufflinks 0.051     Low Low
cufflinks 1.446       High
cufflinks 0.122     Low  
cufflinks 0.054     Low Low
cufflinks 0.844        
cufflinks 0.071     Low Low
cufflinks 0.108        
cufflinks 1.475       High
cufflinks 0.045     Low Low

0 Strain