Gene : Seita.2G281900 S. italica v2.2
Defline:  (1 of 1) PTHR23322:SF3 - PROTEIN SAY1 Genomic Order:  2819
Name:  ? Seita.2G281900 Secondary Identifier:  ? PAC:32720539
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G281900 0.5kb upstream 0.5kb upstream 5767 true scaffold_2: 37873579-37879345 Setaria italica
Seita.2G281900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 37878846-37879345 Setaria italica
Seita.2G281900 0.5kb downstream 0.5kb downstream 5767 true scaffold_2: 37873079-37878845 Setaria italica
Seita.2G281900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 37873079-37873578 Setaria italica
Seita.2G281900 1.0kb upstream 1.0kb upstream 6267 true scaffold_2: 37873579-37879845 Setaria italica
Seita.2G281900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 37878846-37879845 Setaria italica
Seita.2G281900 1.0kb downstream 1.0kb downstream 6267 true scaffold_2: 37872579-37878845 Setaria italica
Seita.2G281900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 37872579-37873578 Setaria italica
Seita.2G281900 2.0kb upstream 2.0kb upstream 7267 true scaffold_2: 37873579-37880845 Setaria italica
Seita.2G281900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 37878846-37880845 Setaria italica
Seita.2G281900 2.0kb downstream 2.0kb downstream 7267 true scaffold_2: 37871579-37878845 Setaria italica
Seita.2G281900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 37871579-37873578 Setaria italica
Seita.2G281900 5.0kb upstream 5.0kb upstream 10267 true scaffold_2: 37873579-37883845 Setaria italica
Seita.2G281900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 37878846-37883845 Setaria italica
Seita.2G281900 5.0kb downstream 5.0kb downstream 10267 true scaffold_2: 37868579-37878845 Setaria italica
Seita.2G281900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 37868579-37873578 Setaria italica
Seita.2G281900 10.0kb upstream 10.0kb upstream 15267 true scaffold_2: 37873579-37888845 Setaria italica
Seita.2G281900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 37878846-37888845 Setaria italica
Seita.2G281900 10.0kb downstream 10.0kb downstream 15267 true scaffold_2: 37863579-37878845 Setaria italica
Seita.2G281900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 37863579-37873578 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190579 5267 Panicoideae View MSA
124572120 5269 Grass View MSA
122043295 5273 Angiosperm View MSA
121350840 5274 Embryophyte View MSA
123428055 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.709     High  
cufflinks 14.052     High  
cufflinks 12.913     High  
cufflinks 10.898       Low
cufflinks 10.135       Low
cufflinks 14.15     High  
cufflinks 13.034        
cufflinks 11.465       Low
cufflinks 12.858     High  
cufflinks 11.787        
cufflinks 13.646     High  
cufflinks 14.325     High  
cufflinks 16.561     High High
cufflinks 14.375     High  
cufflinks 18.381     High High
cufflinks 12.823     High  
cufflinks 14.332     High  
cufflinks 15.174     High  
cufflinks 12.424     High  
cufflinks 14.836     High  

0 Strain