Gene : Seita.2G283100 S. italica v2.2
Defline:  (1 of 1) 4.1.2.53 - 2-keto-3-deoxy-L-rhamnonate aldolase / KDR aldolase Genomic Order:  2831
Name:  ? Seita.2G283100 Secondary Identifier:  ? PAC:32718623
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G283100 0.5kb upstream 0.5kb upstream 2079 true scaffold_2: 37942045-37944123 Setaria italica
Seita.2G283100 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 37943624-37944123 Setaria italica
Seita.2G283100 0.5kb downstream 0.5kb downstream 2079 true scaffold_2: 37941545-37943623 Setaria italica
Seita.2G283100 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 37941545-37942044 Setaria italica
Seita.2G283100 1.0kb upstream 1.0kb upstream 2579 true scaffold_2: 37942045-37944623 Setaria italica
Seita.2G283100 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 37943624-37944623 Setaria italica
Seita.2G283100 1.0kb downstream 1.0kb downstream 2579 true scaffold_2: 37941045-37943623 Setaria italica
Seita.2G283100 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 37941045-37942044 Setaria italica
Seita.2G283100 2.0kb upstream 2.0kb upstream 3579 true scaffold_2: 37942045-37945623 Setaria italica
Seita.2G283100 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 37943624-37945623 Setaria italica
Seita.2G283100 2.0kb downstream 2.0kb downstream 3579 true scaffold_2: 37940045-37943623 Setaria italica
Seita.2G283100 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 37940045-37942044 Setaria italica
Seita.2G283100 5.0kb upstream 5.0kb upstream 6579 true scaffold_2: 37942045-37948623 Setaria italica
Seita.2G283100 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 37943624-37948623 Setaria italica
Seita.2G283100 5.0kb downstream 5.0kb downstream 6579 true scaffold_2: 37937045-37943623 Setaria italica
Seita.2G283100 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 37937045-37942044 Setaria italica
Seita.2G283100 10.0kb upstream 10.0kb upstream 11579 true scaffold_2: 37942045-37953623 Setaria italica
Seita.2G283100 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 37943624-37953623 Setaria italica
Seita.2G283100 10.0kb downstream 10.0kb downstream 11579 true scaffold_2: 37932045-37943623 Setaria italica
Seita.2G283100 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 37932045-37942044 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186974 5267 Panicoideae View MSA
124579918 5269 Grass View MSA
122045726 5273 Angiosperm View MSA
121345930 5274 Embryophyte View MSA
123426145 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.622        
cufflinks 9.773        
cufflinks 1.897       Low
cufflinks 1.597       Low
cufflinks 3.446        
cufflinks 9.241        
cufflinks 8.321        
cufflinks 9.51        
cufflinks 8.225        
cufflinks 8.565        
cufflinks 6.386        
cufflinks 4.338        
cufflinks 2.101        
cufflinks 4.933        
cufflinks 5.629        
cufflinks 3.503        
cufflinks 6.039        
cufflinks 2.218        
cufflinks 0.422       Low
cufflinks 7.238        

0 Strain