Gene : Seita.2G282700 S. italica v2.2
Defline:  (1 of 1) PTHR13943:SF32 - NC DOMAIN-CONTAINING PROTEIN-LIKE PROTEIN Genomic Order:  2827
Name:  ? Seita.2G282700 Secondary Identifier:  ? PAC:32721904
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G282700 0.5kb upstream 0.5kb upstream 3410 true scaffold_2: 37924160-37927569 Setaria italica
Seita.2G282700 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 37927070-37927569 Setaria italica
Seita.2G282700 0.5kb downstream 0.5kb downstream 3410 true scaffold_2: 37923660-37927069 Setaria italica
Seita.2G282700 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 37923660-37924159 Setaria italica
Seita.2G282700 1.0kb upstream 1.0kb upstream 3910 true scaffold_2: 37924160-37928069 Setaria italica
Seita.2G282700 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 37927070-37928069 Setaria italica
Seita.2G282700 1.0kb downstream 1.0kb downstream 3910 true scaffold_2: 37923160-37927069 Setaria italica
Seita.2G282700 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 37923160-37924159 Setaria italica
Seita.2G282700 2.0kb upstream 2.0kb upstream 4910 true scaffold_2: 37924160-37929069 Setaria italica
Seita.2G282700 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 37927070-37929069 Setaria italica
Seita.2G282700 2.0kb downstream 2.0kb downstream 4910 true scaffold_2: 37922160-37927069 Setaria italica
Seita.2G282700 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 37922160-37924159 Setaria italica
Seita.2G282700 5.0kb upstream 5.0kb upstream 7910 true scaffold_2: 37924160-37932069 Setaria italica
Seita.2G282700 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 37927070-37932069 Setaria italica
Seita.2G282700 5.0kb downstream 5.0kb downstream 7910 true scaffold_2: 37919160-37927069 Setaria italica
Seita.2G282700 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 37919160-37924159 Setaria italica
Seita.2G282700 10.0kb upstream 10.0kb upstream 12910 true scaffold_2: 37924160-37937069 Setaria italica
Seita.2G282700 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 37927070-37937069 Setaria italica
Seita.2G282700 10.0kb downstream 10.0kb downstream 12910 true scaffold_2: 37914160-37927069 Setaria italica
Seita.2G282700 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 37914160-37924159 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181656 5267 Panicoideae View MSA
124578509 5269 Grass View MSA
122046172 5273 Angiosperm View MSA
121351388 5274 Embryophyte View MSA
123382148 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.125        
cufflinks 11.602        
cufflinks 1.857       Low
cufflinks 1.652       Low
cufflinks 1.97        
cufflinks 10.463        
cufflinks 4.115        
cufflinks 4.684        
cufflinks 4.849        
cufflinks 6.354        
cufflinks 7.09        
cufflinks 16.349     High High
cufflinks 32.311     High High
cufflinks 1.773       Low
cufflinks 20.244     High High
cufflinks 1.135       Low
cufflinks 18.52     High High
cufflinks 2.198        
cufflinks 1.639       Low
cufflinks 25.366     High High

0 Strain