Gene : Seita.2G288100 S. italica v2.2
Defline:  (1 of 1) PTHR12416:SF3 - RRNA-PROCESSING PROTEIN UTP23 HOMOLOG Genomic Order:  2881
Name:  ? Seita.2G288100 Secondary Identifier:  ? PAC:32723387
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G288100 0.5kb upstream 0.5kb upstream 3005 true scaffold_2: 38416273-38419277 Setaria italica
Seita.2G288100 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 38418778-38419277 Setaria italica
Seita.2G288100 0.5kb downstream 0.5kb downstream 3005 true scaffold_2: 38415773-38418777 Setaria italica
Seita.2G288100 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 38415773-38416272 Setaria italica
Seita.2G288100 1.0kb upstream 1.0kb upstream 3505 true scaffold_2: 38416273-38419777 Setaria italica
Seita.2G288100 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 38418778-38419777 Setaria italica
Seita.2G288100 1.0kb downstream 1.0kb downstream 3505 true scaffold_2: 38415273-38418777 Setaria italica
Seita.2G288100 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 38415273-38416272 Setaria italica
Seita.2G288100 2.0kb upstream 2.0kb upstream 4505 true scaffold_2: 38416273-38420777 Setaria italica
Seita.2G288100 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 38418778-38420777 Setaria italica
Seita.2G288100 2.0kb downstream 2.0kb downstream 4505 true scaffold_2: 38414273-38418777 Setaria italica
Seita.2G288100 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 38414273-38416272 Setaria italica
Seita.2G288100 5.0kb upstream 5.0kb upstream 7505 true scaffold_2: 38416273-38423777 Setaria italica
Seita.2G288100 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 38418778-38423777 Setaria italica
Seita.2G288100 5.0kb downstream 5.0kb downstream 7505 true scaffold_2: 38411273-38418777 Setaria italica
Seita.2G288100 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 38411273-38416272 Setaria italica
Seita.2G288100 10.0kb upstream 10.0kb upstream 12505 true scaffold_2: 38416273-38428777 Setaria italica
Seita.2G288100 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 38418778-38428777 Setaria italica
Seita.2G288100 10.0kb downstream 10.0kb downstream 12505 true scaffold_2: 38406273-38418777 Setaria italica
Seita.2G288100 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 38406273-38416272 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176660 5267 Panicoideae View MSA
124580438 5269 Grass View MSA
122042240 5273 Angiosperm View MSA
121350234 5274 Embryophyte View MSA
123426184 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.575        
cufflinks 2.829       High
cufflinks 0.577       Low
cufflinks 0.408       Low
cufflinks 0.989        
cufflinks 2.708       High
cufflinks 1.729        
cufflinks 1.596        
cufflinks 1.87        
cufflinks 1.701        
cufflinks 1.826        
cufflinks 1.149        
cufflinks 0.93        
cufflinks 1.018        
cufflinks 2.084        
cufflinks 1.052        
cufflinks 1.671        
cufflinks 0.989        
cufflinks 0.757       Low
cufflinks 1.713        

0 Strain