Gene : Seita.2G293700 S. italica v2.2
Defline:  (1 of 130) PF02458 - Transferase family (Transferase) Genomic Order:  2937
Name:  ? Seita.2G293700 Secondary Identifier:  ? PAC:32719718
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G293700 0.5kb upstream 0.5kb upstream 2054 true scaffold_2: 38916747-38918800 Setaria italica
Seita.2G293700 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 38916747-38917246 Setaria italica
Seita.2G293700 0.5kb downstream 0.5kb downstream 2054 true scaffold_2: 38917247-38919300 Setaria italica
Seita.2G293700 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 38918801-38919300 Setaria italica
Seita.2G293700 1.0kb upstream 1.0kb upstream 2554 true scaffold_2: 38916247-38918800 Setaria italica
Seita.2G293700 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 38916247-38917246 Setaria italica
Seita.2G293700 1.0kb downstream 1.0kb downstream 2554 true scaffold_2: 38917247-38919800 Setaria italica
Seita.2G293700 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 38918801-38919800 Setaria italica
Seita.2G293700 2.0kb upstream 2.0kb upstream 3554 true scaffold_2: 38915247-38918800 Setaria italica
Seita.2G293700 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 38915247-38917246 Setaria italica
Seita.2G293700 2.0kb downstream 2.0kb downstream 3554 true scaffold_2: 38917247-38920800 Setaria italica
Seita.2G293700 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 38918801-38920800 Setaria italica
Seita.2G293700 5.0kb upstream 5.0kb upstream 6554 true scaffold_2: 38912247-38918800 Setaria italica
Seita.2G293700 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 38912247-38917246 Setaria italica
Seita.2G293700 5.0kb downstream 5.0kb downstream 6554 true scaffold_2: 38917247-38923800 Setaria italica
Seita.2G293700 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 38918801-38923800 Setaria italica
Seita.2G293700 10.0kb upstream 10.0kb upstream 11554 true scaffold_2: 38907247-38918800 Setaria italica
Seita.2G293700 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 38907247-38917246 Setaria italica
Seita.2G293700 10.0kb downstream 10.0kb downstream 11554 true scaffold_2: 38917247-38928800 Setaria italica
Seita.2G293700 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 38918801-38928800 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175666 5267 Panicoideae View MSA
124586429 5269 Grass View MSA
122051149 5273 Angiosperm View MSA
121350983 5274 Embryophyte View MSA
123428782 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.133        
cufflinks 0.171        
cufflinks 0.016     Low Low
cufflinks 0.018     Low Low
cufflinks 0.039     Low  
cufflinks 0.219        
cufflinks 0.072     Low  
cufflinks 0.049     Low  
cufflinks 0.042     Low  
cufflinks 0.582        
cufflinks 0.207        
cufflinks 6.306       High
cufflinks 3.486       High
cufflinks 0.02     Low Low
cufflinks 2.249       High
cufflinks 0.05     Low  
cufflinks 6.302       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.067     Low  
cufflinks 16.881     High High

0 Strain