Gene : Seita.2G293500 S. italica v2.2
Defline:  (1 of 2) 4.1.1.17 - Ornithine decarboxylase / L-ornithine carboxy-lyase Genomic Order:  2935
Name:  ? Seita.2G293500 Secondary Identifier:  ? PAC:32719225
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica POLYAMINSYN3-PWY Setaria italica pathologic  
Sitalica PWY-46 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G293500 0.5kb upstream 0.5kb upstream 2398 true scaffold_2: 38890762-38893159 Setaria italica
Seita.2G293500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 38892660-38893159 Setaria italica
Seita.2G293500 0.5kb downstream 0.5kb downstream 2398 true scaffold_2: 38890262-38892659 Setaria italica
Seita.2G293500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 38890262-38890761 Setaria italica
Seita.2G293500 1.0kb upstream 1.0kb upstream 2898 true scaffold_2: 38890762-38893659 Setaria italica
Seita.2G293500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 38892660-38893659 Setaria italica
Seita.2G293500 1.0kb downstream 1.0kb downstream 2898 true scaffold_2: 38889762-38892659 Setaria italica
Seita.2G293500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 38889762-38890761 Setaria italica
Seita.2G293500 2.0kb upstream 2.0kb upstream 3898 true scaffold_2: 38890762-38894659 Setaria italica
Seita.2G293500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 38892660-38894659 Setaria italica
Seita.2G293500 2.0kb downstream 2.0kb downstream 3898 true scaffold_2: 38888762-38892659 Setaria italica
Seita.2G293500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 38888762-38890761 Setaria italica
Seita.2G293500 5.0kb upstream 5.0kb upstream 6898 true scaffold_2: 38890762-38897659 Setaria italica
Seita.2G293500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 38892660-38897659 Setaria italica
Seita.2G293500 5.0kb downstream 5.0kb downstream 6898 true scaffold_2: 38885762-38892659 Setaria italica
Seita.2G293500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 38885762-38890761 Setaria italica
Seita.2G293500 10.0kb upstream 10.0kb upstream 11898 true scaffold_2: 38890762-38902659 Setaria italica
Seita.2G293500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 38892660-38902659 Setaria italica
Seita.2G293500 10.0kb downstream 10.0kb downstream 11898 true scaffold_2: 38880762-38892659 Setaria italica
Seita.2G293500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 38880762-38890761 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175244 5267 Panicoideae View MSA
124578154 5269 Grass View MSA
122048449 5273 Angiosperm View MSA
121349416 5274 Embryophyte View MSA
123428095 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.181        
cufflinks 0.536        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.412        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.05     Low Low
cufflinks 0.507        
cufflinks 0.199        
cufflinks 0.265        
cufflinks 0.228        
cufflinks 0.025     Low Low
cufflinks 0.51        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.252        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.435        

0 Strain