Gene : Seita.2G300700 S. italica v2.2
Defline:  (1 of 1) PTHR10073:SF7 - DNA MISMATCH REPAIR PROTEIN MLH3-RELATED Genomic Order:  3007
Name:  ? Seita.2G300700 Secondary Identifier:  ? PAC:32718126
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G300700 0.5kb upstream 0.5kb upstream 8752 true scaffold_2: 39413567-39422318 Setaria italica
Seita.2G300700 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 39421819-39422318 Setaria italica
Seita.2G300700 0.5kb downstream 0.5kb downstream 8752 true scaffold_2: 39413067-39421818 Setaria italica
Seita.2G300700 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 39413067-39413566 Setaria italica
Seita.2G300700 1.0kb upstream 1.0kb upstream 9252 true scaffold_2: 39413567-39422818 Setaria italica
Seita.2G300700 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 39421819-39422818 Setaria italica
Seita.2G300700 1.0kb downstream 1.0kb downstream 9252 true scaffold_2: 39412567-39421818 Setaria italica
Seita.2G300700 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 39412567-39413566 Setaria italica
Seita.2G300700 2.0kb upstream 2.0kb upstream 10252 true scaffold_2: 39413567-39423818 Setaria italica
Seita.2G300700 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 39421819-39423818 Setaria italica
Seita.2G300700 2.0kb downstream 2.0kb downstream 10252 true scaffold_2: 39411567-39421818 Setaria italica
Seita.2G300700 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 39411567-39413566 Setaria italica
Seita.2G300700 5.0kb upstream 5.0kb upstream 13252 true scaffold_2: 39413567-39426818 Setaria italica
Seita.2G300700 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 39421819-39426818 Setaria italica
Seita.2G300700 5.0kb downstream 5.0kb downstream 13252 true scaffold_2: 39408567-39421818 Setaria italica
Seita.2G300700 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 39408567-39413566 Setaria italica
Seita.2G300700 10.0kb upstream 10.0kb upstream 18252 true scaffold_2: 39413567-39431818 Setaria italica
Seita.2G300700 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 39421819-39431818 Setaria italica
Seita.2G300700 10.0kb downstream 10.0kb downstream 18252 true scaffold_2: 39403567-39421818 Setaria italica
Seita.2G300700 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 39403567-39413566 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026337 5273 Angiosperm View MSA
122188042 5267 Panicoideae View MSA
124570235 5269 Grass View MSA
121346649 5274 Embryophyte View MSA
123426273 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.915        
cufflinks 1.903        
cufflinks 2.08       High
cufflinks 1.385        
cufflinks 1.026       Low
cufflinks 2.025       High
cufflinks 1.747        
cufflinks 1.123       Low
cufflinks 1.29        
cufflinks 0.738       Low
cufflinks 1.633        
cufflinks 1.341        
cufflinks 1.729        
cufflinks 1.584        
cufflinks 1.792        
cufflinks 2.026       High
cufflinks 1.35        
cufflinks 1.996       High
cufflinks 1.222        
cufflinks 1.488        

0 Strain