Gene : Seita.2G301800 S. italica v2.2
Defline:  (1 of 1) 2.4.2.19 - Nicotinate-nucleotide diphosphorylase (carboxylating) / Quinolinate phosphoribosyltransferase (decarboxylating) Genomic Order:  3018
Name:  ? Seita.2G301800 Secondary Identifier:  ? PAC:32722653
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5653 Setaria italica pathologic  
Sitalica PYRIDNUCSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G301800 0.5kb upstream 0.5kb upstream 3739 true scaffold_2: 39496981-39500719 Setaria italica
Seita.2G301800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 39496981-39497480 Setaria italica
Seita.2G301800 0.5kb downstream 0.5kb downstream 3739 true scaffold_2: 39497481-39501219 Setaria italica
Seita.2G301800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 39500720-39501219 Setaria italica
Seita.2G301800 1.0kb upstream 1.0kb upstream 4239 true scaffold_2: 39496481-39500719 Setaria italica
Seita.2G301800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 39496481-39497480 Setaria italica
Seita.2G301800 1.0kb downstream 1.0kb downstream 4239 true scaffold_2: 39497481-39501719 Setaria italica
Seita.2G301800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 39500720-39501719 Setaria italica
Seita.2G301800 2.0kb upstream 2.0kb upstream 5239 true scaffold_2: 39495481-39500719 Setaria italica
Seita.2G301800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 39495481-39497480 Setaria italica
Seita.2G301800 2.0kb downstream 2.0kb downstream 5239 true scaffold_2: 39497481-39502719 Setaria italica
Seita.2G301800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 39500720-39502719 Setaria italica
Seita.2G301800 5.0kb upstream 5.0kb upstream 8239 true scaffold_2: 39492481-39500719 Setaria italica
Seita.2G301800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 39492481-39497480 Setaria italica
Seita.2G301800 5.0kb downstream 5.0kb downstream 8239 true scaffold_2: 39497481-39505719 Setaria italica
Seita.2G301800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 39500720-39505719 Setaria italica
Seita.2G301800 10.0kb upstream 10.0kb upstream 13239 true scaffold_2: 39487481-39500719 Setaria italica
Seita.2G301800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 39487481-39497480 Setaria italica
Seita.2G301800 10.0kb downstream 10.0kb downstream 13239 true scaffold_2: 39497481-39510719 Setaria italica
Seita.2G301800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 39500720-39510719 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026837 5273 Angiosperm View MSA
122182567 5267 Panicoideae View MSA
124575538 5269 Grass View MSA
121346230 5274 Embryophyte View MSA
123424244 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.883       High
cufflinks 5.676        
cufflinks 4.845        
cufflinks 4.526        
cufflinks 3.923       Low
cufflinks 5.877        
cufflinks 3.704       Low
cufflinks 4.827        
cufflinks 3.386       Low
cufflinks 3.778       Low
cufflinks 5.376        
cufflinks 6.781       High
cufflinks 6.513       High
cufflinks 4.493        
cufflinks 5.438        
cufflinks 3.912       Low
cufflinks 8.382       High
cufflinks 4.953        
cufflinks 4.174        
cufflinks 5.802        

0 Strain