Gene : Seita.2G303500 S. italica v2.2
Defline:  (1 of 2) PTHR12804 - MICROSOMAL SIGNAL PEPTIDASE 23 KD SUBUNIT SPC22/23 Genomic Order:  3035
Name:  ? Seita.2G303500 Secondary Identifier:  ? PAC:32718957
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G303500 0.5kb upstream 0.5kb upstream 3481 true scaffold_2: 39619475-39622955 Setaria italica
Seita.2G303500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 39622456-39622955 Setaria italica
Seita.2G303500 0.5kb downstream 0.5kb downstream 3481 true scaffold_2: 39618975-39622455 Setaria italica
Seita.2G303500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 39618975-39619474 Setaria italica
Seita.2G303500 1.0kb upstream 1.0kb upstream 3981 true scaffold_2: 39619475-39623455 Setaria italica
Seita.2G303500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 39622456-39623455 Setaria italica
Seita.2G303500 1.0kb downstream 1.0kb downstream 3981 true scaffold_2: 39618475-39622455 Setaria italica
Seita.2G303500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 39618475-39619474 Setaria italica
Seita.2G303500 2.0kb upstream 2.0kb upstream 4981 true scaffold_2: 39619475-39624455 Setaria italica
Seita.2G303500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 39622456-39624455 Setaria italica
Seita.2G303500 2.0kb downstream 2.0kb downstream 4981 true scaffold_2: 39617475-39622455 Setaria italica
Seita.2G303500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 39617475-39619474 Setaria italica
Seita.2G303500 5.0kb upstream 5.0kb upstream 7981 true scaffold_2: 39619475-39627455 Setaria italica
Seita.2G303500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 39622456-39627455 Setaria italica
Seita.2G303500 5.0kb downstream 5.0kb downstream 7981 true scaffold_2: 39614475-39622455 Setaria italica
Seita.2G303500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 39614475-39619474 Setaria italica
Seita.2G303500 10.0kb upstream 10.0kb upstream 12981 true scaffold_2: 39619475-39632455 Setaria italica
Seita.2G303500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 39622456-39632455 Setaria italica
Seita.2G303500 10.0kb downstream 10.0kb downstream 12981 true scaffold_2: 39609475-39622455 Setaria italica
Seita.2G303500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 39609475-39619474 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183493 5267 Panicoideae View MSA
124574519 5269 Grass View MSA
122042946 5273 Angiosperm View MSA
121344173 5274 Embryophyte View MSA
123424952 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.245        
cufflinks 14.273     High  
cufflinks 3.695       Low
cufflinks 3.909       Low
cufflinks 3.029       Low
cufflinks 11.956        
cufflinks 6.625        
cufflinks 11.207        
cufflinks 5.703        
cufflinks 21.045     High High
cufflinks 10.057        
cufflinks 12.407        
cufflinks 10.126        
cufflinks 7.286        
cufflinks 12.209        
cufflinks 5.32        
cufflinks 15.177     High High
cufflinks 6.591        
cufflinks 5.925        
cufflinks 14.006        

0 Strain