Gene : Seita.2G303000 S. italica v2.2
Defline:  (1 of 3) 2.5.1.32 - 15-cis-phytoene synthase / PSase Genomic Order:  3030
Name:  ? Seita.2G303000 Secondary Identifier:  ? PAC:32722143
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica CAROTENOID-PWY Setaria italica pathologic  
Sitalica PWY-6475 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G303000 0.5kb upstream 0.5kb upstream 3899 true scaffold_2: 39561335-39565233 Setaria italica
Seita.2G303000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 39564734-39565233 Setaria italica
Seita.2G303000 0.5kb downstream 0.5kb downstream 3899 true scaffold_2: 39560835-39564733 Setaria italica
Seita.2G303000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 39560835-39561334 Setaria italica
Seita.2G303000 1.0kb upstream 1.0kb upstream 4399 true scaffold_2: 39561335-39565733 Setaria italica
Seita.2G303000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 39564734-39565733 Setaria italica
Seita.2G303000 1.0kb downstream 1.0kb downstream 4399 true scaffold_2: 39560335-39564733 Setaria italica
Seita.2G303000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 39560335-39561334 Setaria italica
Seita.2G303000 2.0kb upstream 2.0kb upstream 5399 true scaffold_2: 39561335-39566733 Setaria italica
Seita.2G303000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 39564734-39566733 Setaria italica
Seita.2G303000 2.0kb downstream 2.0kb downstream 5399 true scaffold_2: 39559335-39564733 Setaria italica
Seita.2G303000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 39559335-39561334 Setaria italica
Seita.2G303000 5.0kb upstream 5.0kb upstream 8399 true scaffold_2: 39561335-39569733 Setaria italica
Seita.2G303000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 39564734-39569733 Setaria italica
Seita.2G303000 5.0kb downstream 5.0kb downstream 8399 true scaffold_2: 39556335-39564733 Setaria italica
Seita.2G303000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 39556335-39561334 Setaria italica
Seita.2G303000 10.0kb upstream 10.0kb upstream 13399 true scaffold_2: 39561335-39574733 Setaria italica
Seita.2G303000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 39564734-39574733 Setaria italica
Seita.2G303000 10.0kb downstream 10.0kb downstream 13399 true scaffold_2: 39551335-39564733 Setaria italica
Seita.2G303000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 39551335-39561334 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121993341 5273 Angiosperm View MSA
122176655 5267 Panicoideae View MSA
124577513 5269 Grass View MSA
121263628 5274 Embryophyte View MSA
123426823 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.551        
cufflinks 0.601       Low
cufflinks 0.601       Low
cufflinks 0.977       Low
cufflinks 0.973       Low
cufflinks 0.625       Low
cufflinks 3.154        
cufflinks 3.5        
cufflinks 2.606        
cufflinks 4.743        
cufflinks 4.139        
cufflinks 6.72       High
cufflinks 6.523       High
cufflinks 6.56       High
cufflinks 3.951        
cufflinks 1.717        
cufflinks 3.455        
cufflinks 0.916       Low
cufflinks 3.271        
cufflinks 2.892        

0 Strain