Gene : Seita.2G306200 S. italica v2.2
Defline:  (1 of 1) PTHR31355:SF5 - ARM REPEAT SUPERFAMILY PROTEIN Genomic Order:  3062
Name:  ? Seita.2G306200 Secondary Identifier:  ? PAC:32718009
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G306200 0.5kb upstream 0.5kb upstream 6631 true scaffold_2: 39847961-39854591 Setaria italica
Seita.2G306200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 39847961-39848460 Setaria italica
Seita.2G306200 0.5kb downstream 0.5kb downstream 6631 true scaffold_2: 39848461-39855091 Setaria italica
Seita.2G306200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 39854592-39855091 Setaria italica
Seita.2G306200 1.0kb upstream 1.0kb upstream 7131 true scaffold_2: 39847461-39854591 Setaria italica
Seita.2G306200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 39847461-39848460 Setaria italica
Seita.2G306200 1.0kb downstream 1.0kb downstream 7131 true scaffold_2: 39848461-39855591 Setaria italica
Seita.2G306200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 39854592-39855591 Setaria italica
Seita.2G306200 2.0kb upstream 2.0kb upstream 8131 true scaffold_2: 39846461-39854591 Setaria italica
Seita.2G306200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 39846461-39848460 Setaria italica
Seita.2G306200 2.0kb downstream 2.0kb downstream 8131 true scaffold_2: 39848461-39856591 Setaria italica
Seita.2G306200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 39854592-39856591 Setaria italica
Seita.2G306200 5.0kb upstream 5.0kb upstream 11131 true scaffold_2: 39843461-39854591 Setaria italica
Seita.2G306200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 39843461-39848460 Setaria italica
Seita.2G306200 5.0kb downstream 5.0kb downstream 11131 true scaffold_2: 39848461-39859591 Setaria italica
Seita.2G306200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 39854592-39859591 Setaria italica
Seita.2G306200 10.0kb upstream 10.0kb upstream 16131 true scaffold_2: 39838461-39854591 Setaria italica
Seita.2G306200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 39838461-39848460 Setaria italica
Seita.2G306200 10.0kb downstream 10.0kb downstream 16131 true scaffold_2: 39848461-39864591 Setaria italica
Seita.2G306200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 39854592-39864591 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181635 5267 Panicoideae View MSA
124584096 5269 Grass View MSA
122044340 5273 Angiosperm View MSA
121344620 5274 Embryophyte View MSA
123426800 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.667        
cufflinks 7.078        
cufflinks 0.011     Low Low
cufflinks 0.004     Low Low
cufflinks 0.015     Low Low
cufflinks 7.401        
cufflinks 5.993        
cufflinks 8.776        
cufflinks 4.804        
cufflinks 2.674        
cufflinks 4.1        
cufflinks 5.094        
cufflinks 1.803        
cufflinks 0.013     Low Low
cufflinks 6.69        
cufflinks 0.789        
cufflinks 5.925        
cufflinks 1.113        
cufflinks 0.011     Low Low
cufflinks 7.409        

0 Strain