Gene : Seita.2G309200 S. italica v2.2
Defline:  (1 of 1) PF09360 - Iron-binding zinc finger CDGSH type (zf-CDGSH) Genomic Order:  3092
Name:  ? Seita.2G309200 Secondary Identifier:  ? PAC:32721861
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G309200 0.5kb upstream 0.5kb upstream 2471 true scaffold_2: 40027412-40029882 Setaria italica
Seita.2G309200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 40027412-40027911 Setaria italica
Seita.2G309200 0.5kb downstream 0.5kb downstream 2471 true scaffold_2: 40027912-40030382 Setaria italica
Seita.2G309200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 40029883-40030382 Setaria italica
Seita.2G309200 1.0kb upstream 1.0kb upstream 2971 true scaffold_2: 40026912-40029882 Setaria italica
Seita.2G309200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 40026912-40027911 Setaria italica
Seita.2G309200 1.0kb downstream 1.0kb downstream 2971 true scaffold_2: 40027912-40030882 Setaria italica
Seita.2G309200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 40029883-40030882 Setaria italica
Seita.2G309200 2.0kb upstream 2.0kb upstream 3971 true scaffold_2: 40025912-40029882 Setaria italica
Seita.2G309200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 40025912-40027911 Setaria italica
Seita.2G309200 2.0kb downstream 2.0kb downstream 3971 true scaffold_2: 40027912-40031882 Setaria italica
Seita.2G309200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 40029883-40031882 Setaria italica
Seita.2G309200 5.0kb upstream 5.0kb upstream 6971 true scaffold_2: 40022912-40029882 Setaria italica
Seita.2G309200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 40022912-40027911 Setaria italica
Seita.2G309200 5.0kb downstream 5.0kb downstream 6971 true scaffold_2: 40027912-40034882 Setaria italica
Seita.2G309200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 40029883-40034882 Setaria italica
Seita.2G309200 10.0kb upstream 10.0kb upstream 11971 true scaffold_2: 40017912-40029882 Setaria italica
Seita.2G309200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 40017912-40027911 Setaria italica
Seita.2G309200 10.0kb downstream 10.0kb downstream 11971 true scaffold_2: 40027912-40039882 Setaria italica
Seita.2G309200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 40029883-40039882 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180772 5267 Panicoideae View MSA
124575321 5269 Grass View MSA
122050079 5273 Angiosperm View MSA
121346719 5274 Embryophyte View MSA
123425525 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.084        
cufflinks 1.226        
cufflinks 0.365       Low
cufflinks 0.402       Low
cufflinks 2.923        
cufflinks 1.333        
cufflinks 4.88       High
cufflinks 11.0       High
cufflinks 10.786       High
cufflinks 6.926       High
cufflinks 1.398        
cufflinks 0.965        
cufflinks 1.289        
cufflinks 0.933        
cufflinks 0.522       Low
cufflinks 4.886       High
cufflinks 1.277        
cufflinks 1.137        
cufflinks 2.627        
cufflinks 0.912        

0 Strain