Gene : Seita.2G309300 S. italica v2.2
Defline:  (1 of 1) PTHR14986 - RURM1 PROTEIN Genomic Order:  3093
Name:  ? Seita.2G309300 Secondary Identifier:  ? PAC:32718776
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G309300 0.5kb upstream 0.5kb upstream 3177 true scaffold_2: 40030779-40033955 Setaria italica
Seita.2G309300 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 40030779-40031278 Setaria italica
Seita.2G309300 0.5kb downstream 0.5kb downstream 3177 true scaffold_2: 40031279-40034455 Setaria italica
Seita.2G309300 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 40033956-40034455 Setaria italica
Seita.2G309300 1.0kb upstream 1.0kb upstream 3677 true scaffold_2: 40030279-40033955 Setaria italica
Seita.2G309300 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 40030279-40031278 Setaria italica
Seita.2G309300 1.0kb downstream 1.0kb downstream 3677 true scaffold_2: 40031279-40034955 Setaria italica
Seita.2G309300 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 40033956-40034955 Setaria italica
Seita.2G309300 2.0kb upstream 2.0kb upstream 4677 true scaffold_2: 40029279-40033955 Setaria italica
Seita.2G309300 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 40029279-40031278 Setaria italica
Seita.2G309300 2.0kb downstream 2.0kb downstream 4677 true scaffold_2: 40031279-40035955 Setaria italica
Seita.2G309300 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 40033956-40035955 Setaria italica
Seita.2G309300 5.0kb upstream 5.0kb upstream 7677 true scaffold_2: 40026279-40033955 Setaria italica
Seita.2G309300 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 40026279-40031278 Setaria italica
Seita.2G309300 5.0kb downstream 5.0kb downstream 7677 true scaffold_2: 40031279-40038955 Setaria italica
Seita.2G309300 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 40033956-40038955 Setaria italica
Seita.2G309300 10.0kb upstream 10.0kb upstream 12677 true scaffold_2: 40021279-40033955 Setaria italica
Seita.2G309300 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 40021279-40031278 Setaria italica
Seita.2G309300 10.0kb downstream 10.0kb downstream 12677 true scaffold_2: 40031279-40043955 Setaria italica
Seita.2G309300 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 40033956-40043955 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176767 5267 Panicoideae View MSA
124578759 5269 Grass View MSA
122042702 5273 Angiosperm View MSA
121349915 5274 Embryophyte View MSA
123424285 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.594        
cufflinks 3.814        
cufflinks 4.181        
cufflinks 3.866        
cufflinks 3.724        
cufflinks 5.104        
cufflinks 3.016       Low
cufflinks 5.883        
cufflinks 3.867        
cufflinks 3.397        
cufflinks 3.663        
cufflinks 8.024       High
cufflinks 5.426        
cufflinks 6.016        
cufflinks 5.777        
cufflinks 2.377       Low
cufflinks 9.409       High
cufflinks 2.363       Low
cufflinks 3.931        
cufflinks 6.711       High

0 Strain