Gene : Seita.2G308000 S. italica v2.2
Defline:  (1 of 3) PTHR14237:SF30 - MITOCHONDRIAL AMIDOXIME-REDUCING COMPONENT 1 Genomic Order:  3080
Name:  ? Seita.2G308000 Secondary Identifier:  ? PAC:32720274
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5963 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G308000 0.5kb upstream 0.5kb upstream 3818 true scaffold_2: 39961558-39965375 Setaria italica
Seita.2G308000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 39961558-39962057 Setaria italica
Seita.2G308000 0.5kb downstream 0.5kb downstream 3818 true scaffold_2: 39962058-39965875 Setaria italica
Seita.2G308000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 39965376-39965875 Setaria italica
Seita.2G308000 1.0kb upstream 1.0kb upstream 4318 true scaffold_2: 39961058-39965375 Setaria italica
Seita.2G308000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 39961058-39962057 Setaria italica
Seita.2G308000 1.0kb downstream 1.0kb downstream 4318 true scaffold_2: 39962058-39966375 Setaria italica
Seita.2G308000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 39965376-39966375 Setaria italica
Seita.2G308000 2.0kb upstream 2.0kb upstream 5318 true scaffold_2: 39960058-39965375 Setaria italica
Seita.2G308000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 39960058-39962057 Setaria italica
Seita.2G308000 2.0kb downstream 2.0kb downstream 5318 true scaffold_2: 39962058-39967375 Setaria italica
Seita.2G308000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 39965376-39967375 Setaria italica
Seita.2G308000 5.0kb upstream 5.0kb upstream 8318 true scaffold_2: 39957058-39965375 Setaria italica
Seita.2G308000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 39957058-39962057 Setaria italica
Seita.2G308000 5.0kb downstream 5.0kb downstream 8318 true scaffold_2: 39962058-39970375 Setaria italica
Seita.2G308000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 39965376-39970375 Setaria italica
Seita.2G308000 10.0kb upstream 10.0kb upstream 13318 true scaffold_2: 39952058-39965375 Setaria italica
Seita.2G308000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 39952058-39962057 Setaria italica
Seita.2G308000 10.0kb downstream 10.0kb downstream 13318 true scaffold_2: 39962058-39975375 Setaria italica
Seita.2G308000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 39965376-39975375 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198845 5267 Panicoideae View MSA
124575993 5269 Grass View MSA
122043484 5273 Angiosperm View MSA
123428941 5275 Viridiplantae View MSA
121347613 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.031     Low  
cufflinks 0.009     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low Low
cufflinks 0.022     Low  
cufflinks 0.027     Low  
cufflinks 0.005     Low Low
cufflinks 0.032     Low  
cufflinks 0.022     Low  
cufflinks 3.99       High
cufflinks 1.508       High
cufflinks 8.482       High
cufflinks 0.909        
cufflinks 0.076     Low  
cufflinks 3.57       High
cufflinks 0.006     Low Low
cufflinks 1.352       High
cufflinks 0.055     Low  
cufflinks 0.043     Low  
cufflinks 0.367        

0 Strain