Gene : Seita.2G308300 S. italica v2.2
Defline:  (1 of 3) PTHR14237:SF30 - MITOCHONDRIAL AMIDOXIME-REDUCING COMPONENT 1 Genomic Order:  3083
Name:  ? Seita.2G308300 Secondary Identifier:  ? PAC:32721736
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5963 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G308300 0.5kb upstream 0.5kb upstream 3365 true scaffold_2: 39978754-39982118 Setaria italica
Seita.2G308300 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 39978754-39979253 Setaria italica
Seita.2G308300 0.5kb downstream 0.5kb downstream 3365 true scaffold_2: 39979254-39982618 Setaria italica
Seita.2G308300 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 39982119-39982618 Setaria italica
Seita.2G308300 1.0kb upstream 1.0kb upstream 3865 true scaffold_2: 39978254-39982118 Setaria italica
Seita.2G308300 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 39978254-39979253 Setaria italica
Seita.2G308300 1.0kb downstream 1.0kb downstream 3865 true scaffold_2: 39979254-39983118 Setaria italica
Seita.2G308300 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 39982119-39983118 Setaria italica
Seita.2G308300 2.0kb upstream 2.0kb upstream 4865 true scaffold_2: 39977254-39982118 Setaria italica
Seita.2G308300 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 39977254-39979253 Setaria italica
Seita.2G308300 2.0kb downstream 2.0kb downstream 4865 true scaffold_2: 39979254-39984118 Setaria italica
Seita.2G308300 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 39982119-39984118 Setaria italica
Seita.2G308300 5.0kb upstream 5.0kb upstream 7865 true scaffold_2: 39974254-39982118 Setaria italica
Seita.2G308300 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 39974254-39979253 Setaria italica
Seita.2G308300 5.0kb downstream 5.0kb downstream 7865 true scaffold_2: 39979254-39987118 Setaria italica
Seita.2G308300 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 39982119-39987118 Setaria italica
Seita.2G308300 10.0kb upstream 10.0kb upstream 12865 true scaffold_2: 39969254-39982118 Setaria italica
Seita.2G308300 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 39969254-39979253 Setaria italica
Seita.2G308300 10.0kb downstream 10.0kb downstream 12865 true scaffold_2: 39979254-39992118 Setaria italica
Seita.2G308300 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 39982119-39992118 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122031182 5273 Angiosperm View MSA
122200283 5267 Panicoideae View MSA
124468249 5269 Grass View MSA
123428941 5275 Viridiplantae View MSA
121300268 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.6     High  
cufflinks 17.703     High  
cufflinks 9.396        
cufflinks 11.647     High  
cufflinks 9.196       Low
cufflinks 12.658        
cufflinks 7.429       Low
cufflinks 11.92        
cufflinks 9.82        
cufflinks 21.481     High High
cufflinks 13.358        
cufflinks 13.553        
cufflinks 23.109     High High
cufflinks 12.907        
cufflinks 14.843     High  
cufflinks 8.934       Low
cufflinks 23.824     High High
cufflinks 13.33     High  
cufflinks 7.944       Low
cufflinks 17.333     High  

0 Strain