Gene : Seita.2G308200 S. italica v2.2
Defline:  (1 of 3) PTHR14237:SF30 - MITOCHONDRIAL AMIDOXIME-REDUCING COMPONENT 1 Genomic Order:  3082
Name:  ? Seita.2G308200 Secondary Identifier:  ? PAC:32719322
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5963 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G308200 0.5kb upstream 0.5kb upstream 3998 true scaffold_2: 39972418-39976415 Setaria italica
Seita.2G308200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 39972418-39972917 Setaria italica
Seita.2G308200 0.5kb downstream 0.5kb downstream 3998 true scaffold_2: 39972918-39976915 Setaria italica
Seita.2G308200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 39976416-39976915 Setaria italica
Seita.2G308200 1.0kb upstream 1.0kb upstream 4498 true scaffold_2: 39971918-39976415 Setaria italica
Seita.2G308200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 39971918-39972917 Setaria italica
Seita.2G308200 1.0kb downstream 1.0kb downstream 4498 true scaffold_2: 39972918-39977415 Setaria italica
Seita.2G308200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 39976416-39977415 Setaria italica
Seita.2G308200 2.0kb upstream 2.0kb upstream 5498 true scaffold_2: 39970918-39976415 Setaria italica
Seita.2G308200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 39970918-39972917 Setaria italica
Seita.2G308200 2.0kb downstream 2.0kb downstream 5498 true scaffold_2: 39972918-39978415 Setaria italica
Seita.2G308200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 39976416-39978415 Setaria italica
Seita.2G308200 5.0kb upstream 5.0kb upstream 8498 true scaffold_2: 39967918-39976415 Setaria italica
Seita.2G308200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 39967918-39972917 Setaria italica
Seita.2G308200 5.0kb downstream 5.0kb downstream 8498 true scaffold_2: 39972918-39981415 Setaria italica
Seita.2G308200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 39976416-39981415 Setaria italica
Seita.2G308200 10.0kb upstream 10.0kb upstream 13498 true scaffold_2: 39962918-39976415 Setaria italica
Seita.2G308200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 39962918-39972917 Setaria italica
Seita.2G308200 10.0kb downstream 10.0kb downstream 13498 true scaffold_2: 39972918-39986415 Setaria italica
Seita.2G308200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 39976416-39986415 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198845 5267 Panicoideae View MSA
124575993 5269 Grass View MSA
122043484 5273 Angiosperm View MSA
123428941 5275 Viridiplantae View MSA
121347613 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.056        
cufflinks 2.295        
cufflinks 22.739     High High
cufflinks 33.263     High High
cufflinks 19.698     High High
cufflinks 1.476        
cufflinks 5.977        
cufflinks 13.409     High High
cufflinks 3.615        
cufflinks 1.877        
cufflinks 0.876       Low
cufflinks 0.995        
cufflinks 1.073        
cufflinks 10.878        
cufflinks 0.663       Low
cufflinks 10.316        
cufflinks 1.28        
cufflinks 1.67        
cufflinks 17.15     High High
cufflinks 0.703       Low

0 Strain