Gene : Seita.2G312200 S. italica v2.2
Defline:  (1 of 1) PTHR12709:SF1 - DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC8 Genomic Order:  3122
Name:  ? Seita.2G312200 Secondary Identifier:  ? PAC:32719772
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G312200 0.5kb upstream 0.5kb upstream 4930 true scaffold_2: 40297230-40302159 Setaria italica
Seita.2G312200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 40297230-40297729 Setaria italica
Seita.2G312200 0.5kb downstream 0.5kb downstream 4930 true scaffold_2: 40297730-40302659 Setaria italica
Seita.2G312200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 40302160-40302659 Setaria italica
Seita.2G312200 1.0kb upstream 1.0kb upstream 5430 true scaffold_2: 40296730-40302159 Setaria italica
Seita.2G312200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 40296730-40297729 Setaria italica
Seita.2G312200 1.0kb downstream 1.0kb downstream 5430 true scaffold_2: 40297730-40303159 Setaria italica
Seita.2G312200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 40302160-40303159 Setaria italica
Seita.2G312200 2.0kb upstream 2.0kb upstream 6430 true scaffold_2: 40295730-40302159 Setaria italica
Seita.2G312200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 40295730-40297729 Setaria italica
Seita.2G312200 2.0kb downstream 2.0kb downstream 6430 true scaffold_2: 40297730-40304159 Setaria italica
Seita.2G312200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 40302160-40304159 Setaria italica
Seita.2G312200 5.0kb upstream 5.0kb upstream 9430 true scaffold_2: 40292730-40302159 Setaria italica
Seita.2G312200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 40292730-40297729 Setaria italica
Seita.2G312200 5.0kb downstream 5.0kb downstream 9430 true scaffold_2: 40297730-40307159 Setaria italica
Seita.2G312200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 40302160-40307159 Setaria italica
Seita.2G312200 10.0kb upstream 10.0kb upstream 14430 true scaffold_2: 40287730-40302159 Setaria italica
Seita.2G312200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 40287730-40297729 Setaria italica
Seita.2G312200 10.0kb downstream 10.0kb downstream 14430 true scaffold_2: 40297730-40312159 Setaria italica
Seita.2G312200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 40302160-40312159 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026323 5273 Angiosperm View MSA
122186871 5267 Panicoideae View MSA
124573422 5269 Grass View MSA
121347367 5274 Embryophyte View MSA
123423953 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.85        
cufflinks 1.123        
cufflinks 0.268       Low
cufflinks 0.11       Low
cufflinks 0.241       Low
cufflinks 1.254       High
cufflinks 0.566        
cufflinks 1.035        
cufflinks 0.917        
cufflinks 1.12        
cufflinks 0.716        
cufflinks 0.985        
cufflinks 0.604        
cufflinks 0.666        
cufflinks 0.891        
cufflinks 0.541        
cufflinks 1.242        
cufflinks 0.412        
cufflinks 0.153       Low
cufflinks 1.011        

0 Strain