Gene : Seita.2G241600 S. italica v2.2
Defline:  (1 of 4) PTHR11528:SF41 - HEAT SHOCK PROTEIN 89.1 Genomic Order:  2416
Name:  ? Seita.2G241600 Secondary Identifier:  ? PAC:32723475
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G241600 0.5kb upstream 0.5kb upstream 5715 true scaffold_2: 34600249-34605963 Setaria italica
Seita.2G241600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 34605464-34605963 Setaria italica
Seita.2G241600 0.5kb downstream 0.5kb downstream 5715 true scaffold_2: 34599749-34605463 Setaria italica
Seita.2G241600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 34599749-34600248 Setaria italica
Seita.2G241600 1.0kb upstream 1.0kb upstream 6215 true scaffold_2: 34600249-34606463 Setaria italica
Seita.2G241600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 34605464-34606463 Setaria italica
Seita.2G241600 1.0kb downstream 1.0kb downstream 6215 true scaffold_2: 34599249-34605463 Setaria italica
Seita.2G241600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 34599249-34600248 Setaria italica
Seita.2G241600 2.0kb upstream 2.0kb upstream 7215 true scaffold_2: 34600249-34607463 Setaria italica
Seita.2G241600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 34605464-34607463 Setaria italica
Seita.2G241600 2.0kb downstream 2.0kb downstream 7215 true scaffold_2: 34598249-34605463 Setaria italica
Seita.2G241600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 34598249-34600248 Setaria italica
Seita.2G241600 5.0kb upstream 5.0kb upstream 10215 true scaffold_2: 34600249-34610463 Setaria italica
Seita.2G241600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 34605464-34610463 Setaria italica
Seita.2G241600 5.0kb downstream 5.0kb downstream 10215 true scaffold_2: 34595249-34605463 Setaria italica
Seita.2G241600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 34595249-34600248 Setaria italica
Seita.2G241600 10.0kb upstream 10.0kb upstream 15215 true scaffold_2: 34600249-34615463 Setaria italica
Seita.2G241600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 34605464-34615463 Setaria italica
Seita.2G241600 10.0kb downstream 10.0kb downstream 15215 true scaffold_2: 34590249-34605463 Setaria italica
Seita.2G241600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 34590249-34600248 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182801 5267 Panicoideae View MSA
124586051 5269 Grass View MSA
122041747 5273 Angiosperm View MSA
121344941 5274 Embryophyte View MSA
123428204 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.776     High High
cufflinks 7.725        
cufflinks 6.845        
cufflinks 3.044       Low
cufflinks 5.349        
cufflinks 6.961        
cufflinks 16.436     High  
cufflinks 9.566        
cufflinks 31.342     High High
cufflinks 5.716        
cufflinks 8.487        
cufflinks 3.425       Low
cufflinks 2.98       Low
cufflinks 13.632        
cufflinks 3.594        
cufflinks 27.811     High High
cufflinks 2.702       Low
cufflinks 27.132     High High
cufflinks 12.13     High  
cufflinks 2.689       Low

0 Strain