Gene : Seita.2G252800 S. italica v2.2
Defline:  (1 of 1) PTHR12419//PTHR12419:SF25 - OTU DOMAIN CONTAINING PROTEIN Genomic Order:  2528
Name:  ? Seita.2G252800 Secondary Identifier:  ? PAC:32723370
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G252800 0.5kb upstream 0.5kb upstream 3784 true scaffold_2: 35557734-35561517 Setaria italica
Seita.2G252800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 35557734-35558233 Setaria italica
Seita.2G252800 0.5kb downstream 0.5kb downstream 3784 true scaffold_2: 35558234-35562017 Setaria italica
Seita.2G252800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 35561518-35562017 Setaria italica
Seita.2G252800 1.0kb upstream 1.0kb upstream 4284 true scaffold_2: 35557234-35561517 Setaria italica
Seita.2G252800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 35557234-35558233 Setaria italica
Seita.2G252800 1.0kb downstream 1.0kb downstream 4284 true scaffold_2: 35558234-35562517 Setaria italica
Seita.2G252800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 35561518-35562517 Setaria italica
Seita.2G252800 2.0kb upstream 2.0kb upstream 5284 true scaffold_2: 35556234-35561517 Setaria italica
Seita.2G252800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 35556234-35558233 Setaria italica
Seita.2G252800 2.0kb downstream 2.0kb downstream 5284 true scaffold_2: 35558234-35563517 Setaria italica
Seita.2G252800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 35561518-35563517 Setaria italica
Seita.2G252800 5.0kb upstream 5.0kb upstream 8284 true scaffold_2: 35553234-35561517 Setaria italica
Seita.2G252800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 35553234-35558233 Setaria italica
Seita.2G252800 5.0kb downstream 5.0kb downstream 8284 true scaffold_2: 35558234-35566517 Setaria italica
Seita.2G252800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 35561518-35566517 Setaria italica
Seita.2G252800 10.0kb upstream 10.0kb upstream 13284 true scaffold_2: 35548234-35561517 Setaria italica
Seita.2G252800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 35548234-35558233 Setaria italica
Seita.2G252800 10.0kb downstream 10.0kb downstream 13284 true scaffold_2: 35558234-35571517 Setaria italica
Seita.2G252800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 35561518-35571517 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190006 5267 Panicoideae View MSA
124574807 5269 Grass View MSA
122048756 5273 Angiosperm View MSA
121349238 5274 Embryophyte View MSA
123428485 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.369        
cufflinks 3.225        
cufflinks 4.126        
cufflinks 3.778        
cufflinks 5.133       High
cufflinks 3.497        
cufflinks 4.75        
cufflinks 3.652        
cufflinks 7.291       High
cufflinks 1.596       Low
cufflinks 1.906       Low
cufflinks 1.984        
cufflinks 1.483       Low
cufflinks 3.956        
cufflinks 1.512       Low
cufflinks 4.725        
cufflinks 2.293        
cufflinks 2.892        
cufflinks 3.572        
cufflinks 2.314        

0 Strain