Gene : Seita.2G257800 S. italica v2.2
Defline:  (1 of 2) PTHR21043:SF1 - PROTEIN IOJAP, CHLOROPLASTIC Genomic Order:  2578
Name:  ? Seita.2G257800 Secondary Identifier:  ? PAC:32720889
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G257800 0.5kb upstream 0.5kb upstream 3232 true scaffold_2: 36076607-36079838 Setaria italica
Seita.2G257800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 36076607-36077106 Setaria italica
Seita.2G257800 0.5kb downstream 0.5kb downstream 3232 true scaffold_2: 36077107-36080338 Setaria italica
Seita.2G257800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 36079839-36080338 Setaria italica
Seita.2G257800 1.0kb upstream 1.0kb upstream 3732 true scaffold_2: 36076107-36079838 Setaria italica
Seita.2G257800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 36076107-36077106 Setaria italica
Seita.2G257800 1.0kb downstream 1.0kb downstream 3732 true scaffold_2: 36077107-36080838 Setaria italica
Seita.2G257800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 36079839-36080838 Setaria italica
Seita.2G257800 2.0kb upstream 2.0kb upstream 4732 true scaffold_2: 36075107-36079838 Setaria italica
Seita.2G257800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 36075107-36077106 Setaria italica
Seita.2G257800 2.0kb downstream 2.0kb downstream 4732 true scaffold_2: 36077107-36081838 Setaria italica
Seita.2G257800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 36079839-36081838 Setaria italica
Seita.2G257800 5.0kb upstream 5.0kb upstream 7732 true scaffold_2: 36072107-36079838 Setaria italica
Seita.2G257800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 36072107-36077106 Setaria italica
Seita.2G257800 5.0kb downstream 5.0kb downstream 7732 true scaffold_2: 36077107-36084838 Setaria italica
Seita.2G257800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 36079839-36084838 Setaria italica
Seita.2G257800 10.0kb upstream 10.0kb upstream 12732 true scaffold_2: 36067107-36079838 Setaria italica
Seita.2G257800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 36067107-36077106 Setaria italica
Seita.2G257800 10.0kb downstream 10.0kb downstream 12732 true scaffold_2: 36077107-36089838 Setaria italica
Seita.2G257800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 36079839-36089838 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189021 5267 Panicoideae View MSA
124588268 5269 Grass View MSA
122043136 5273 Angiosperm View MSA
121343948 5274 Embryophyte View MSA
123426763 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.399        
cufflinks 9.493        
cufflinks 15.355     High  
cufflinks 12.603     High  
cufflinks 21.393     High High
cufflinks 11.746        
cufflinks 15.37     High  
cufflinks 30.403     High High
cufflinks 40.525     High High
cufflinks 10.412        
cufflinks 6.847        
cufflinks 3.063       Low
cufflinks 2.404       Low
cufflinks 19.105     High  
cufflinks 2.397       Low
cufflinks 10.794        
cufflinks 3.344       Low
cufflinks 7.173        
cufflinks 7.589        
cufflinks 2.57       Low

0 Strain