Gene : Seita.2G260300 S. italica v2.2
Defline:  (1 of 2) PTHR12919:SF20 - 28S RIBOSOMAL PROTEIN S16, MITOCHONDRIAL Genomic Order:  2603
Name:  ? Seita.2G260300 Secondary Identifier:  ? PAC:32721408
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G260300 0.5kb upstream 0.5kb upstream 2257 true scaffold_2: 36276858-36279114 Setaria italica
Seita.2G260300 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 36276858-36277357 Setaria italica
Seita.2G260300 0.5kb downstream 0.5kb downstream 2257 true scaffold_2: 36277358-36279614 Setaria italica
Seita.2G260300 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 36279115-36279614 Setaria italica
Seita.2G260300 1.0kb upstream 1.0kb upstream 2757 true scaffold_2: 36276358-36279114 Setaria italica
Seita.2G260300 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 36276358-36277357 Setaria italica
Seita.2G260300 1.0kb downstream 1.0kb downstream 2757 true scaffold_2: 36277358-36280114 Setaria italica
Seita.2G260300 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 36279115-36280114 Setaria italica
Seita.2G260300 2.0kb upstream 2.0kb upstream 3757 true scaffold_2: 36275358-36279114 Setaria italica
Seita.2G260300 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 36275358-36277357 Setaria italica
Seita.2G260300 2.0kb downstream 2.0kb downstream 3757 true scaffold_2: 36277358-36281114 Setaria italica
Seita.2G260300 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 36279115-36281114 Setaria italica
Seita.2G260300 5.0kb upstream 5.0kb upstream 6757 true scaffold_2: 36272358-36279114 Setaria italica
Seita.2G260300 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 36272358-36277357 Setaria italica
Seita.2G260300 5.0kb downstream 5.0kb downstream 6757 true scaffold_2: 36277358-36284114 Setaria italica
Seita.2G260300 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 36279115-36284114 Setaria italica
Seita.2G260300 10.0kb upstream 10.0kb upstream 11757 true scaffold_2: 36267358-36279114 Setaria italica
Seita.2G260300 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 36267358-36277357 Setaria italica
Seita.2G260300 10.0kb downstream 10.0kb downstream 11757 true scaffold_2: 36277358-36289114 Setaria italica
Seita.2G260300 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 36279115-36289114 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182751 5267 Panicoideae View MSA
124580342 5269 Grass View MSA
122051162 5273 Angiosperm View MSA
121348917 5274 Embryophyte View MSA
123426601 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.733        
cufflinks 13.268     High  
cufflinks 4.802       Low
cufflinks 4.294       Low
cufflinks 5.083       Low
cufflinks 13.663     High  
cufflinks 7.133        
cufflinks 12.461        
cufflinks 9.705        
cufflinks 16.699     High High
cufflinks 8.196        
cufflinks 12.838        
cufflinks 10.138        
cufflinks 9.102        
cufflinks 10.912        
cufflinks 5.806        
cufflinks 16.948     High High
cufflinks 5.31       Low
cufflinks 5.481       Low
cufflinks 15.236     High High

0 Strain