Gene : Seita.2G258900 S. italica v2.2
Genomic Order:  2589 Name:  ? Seita.2G258900
Secondary Identifier:  ? PAC:32721567
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G258900 0.5kb upstream 0.5kb upstream 2691 true scaffold_2: 36142754-36145444 Setaria italica
Seita.2G258900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 36144945-36145444 Setaria italica
Seita.2G258900 0.5kb downstream 0.5kb downstream 2691 true scaffold_2: 36142254-36144944 Setaria italica
Seita.2G258900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 36142254-36142753 Setaria italica
Seita.2G258900 1.0kb upstream 1.0kb upstream 3191 true scaffold_2: 36142754-36145944 Setaria italica
Seita.2G258900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 36144945-36145944 Setaria italica
Seita.2G258900 1.0kb downstream 1.0kb downstream 3191 true scaffold_2: 36141754-36144944 Setaria italica
Seita.2G258900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 36141754-36142753 Setaria italica
Seita.2G258900 2.0kb upstream 2.0kb upstream 4191 true scaffold_2: 36142754-36146944 Setaria italica
Seita.2G258900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 36144945-36146944 Setaria italica
Seita.2G258900 2.0kb downstream 2.0kb downstream 4191 true scaffold_2: 36140754-36144944 Setaria italica
Seita.2G258900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 36140754-36142753 Setaria italica
Seita.2G258900 5.0kb upstream 5.0kb upstream 7191 true scaffold_2: 36142754-36149944 Setaria italica
Seita.2G258900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 36144945-36149944 Setaria italica
Seita.2G258900 5.0kb downstream 5.0kb downstream 7191 true scaffold_2: 36137754-36144944 Setaria italica
Seita.2G258900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 36137754-36142753 Setaria italica
Seita.2G258900 10.0kb upstream 10.0kb upstream 12191 true scaffold_2: 36142754-36154944 Setaria italica
Seita.2G258900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 36144945-36154944 Setaria italica
Seita.2G258900 10.0kb downstream 10.0kb downstream 12191 true scaffold_2: 36132754-36144944 Setaria italica
Seita.2G258900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 36132754-36142753 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191476 5267 Panicoideae View MSA
124575035 5269 Grass View MSA
122044316 5273 Angiosperm View MSA
121310275 5274 Embryophyte View MSA
123347809 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.02     Low  
cufflinks 0.471       High
cufflinks 0.008     Low Low
cufflinks 0.023     Low  
cufflinks 0.008     Low Low
cufflinks 0.606       High
cufflinks 0.077     Low  
cufflinks 0.021     Low  
cufflinks 0.034     Low  
cufflinks 0.05     Low  
cufflinks 0.05     Low  
cufflinks 0.168        
cufflinks 0.12     Low  
cufflinks 0.083     Low  
cufflinks 0.066     Low  
cufflinks 0.027     Low  
cufflinks 0.007     Low Low
cufflinks 0.364       High
cufflinks 0.201        
cufflinks 0.078     Low  

0 Strain