Gene : Seita.2G266300 S. italica v2.2
Defline:  (1 of 3) PF02301 - HORMA domain (HORMA) Genomic Order:  2663
Name:  ? Seita.2G266300 Secondary Identifier:  ? PAC:32720704
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G266300 0.5kb upstream 0.5kb upstream 8087 true scaffold_2: 36688690-36696776 Setaria italica
Seita.2G266300 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 36688690-36689189 Setaria italica
Seita.2G266300 0.5kb downstream 0.5kb downstream 8087 true scaffold_2: 36689190-36697276 Setaria italica
Seita.2G266300 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 36696777-36697276 Setaria italica
Seita.2G266300 1.0kb upstream 1.0kb upstream 8587 true scaffold_2: 36688190-36696776 Setaria italica
Seita.2G266300 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 36688190-36689189 Setaria italica
Seita.2G266300 1.0kb downstream 1.0kb downstream 8587 true scaffold_2: 36689190-36697776 Setaria italica
Seita.2G266300 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 36696777-36697776 Setaria italica
Seita.2G266300 2.0kb upstream 2.0kb upstream 9587 true scaffold_2: 36687190-36696776 Setaria italica
Seita.2G266300 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 36687190-36689189 Setaria italica
Seita.2G266300 2.0kb downstream 2.0kb downstream 9587 true scaffold_2: 36689190-36698776 Setaria italica
Seita.2G266300 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 36696777-36698776 Setaria italica
Seita.2G266300 5.0kb upstream 5.0kb upstream 12587 true scaffold_2: 36684190-36696776 Setaria italica
Seita.2G266300 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 36684190-36689189 Setaria italica
Seita.2G266300 5.0kb downstream 5.0kb downstream 12587 true scaffold_2: 36689190-36701776 Setaria italica
Seita.2G266300 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 36696777-36701776 Setaria italica
Seita.2G266300 10.0kb upstream 10.0kb upstream 17587 true scaffold_2: 36679190-36696776 Setaria italica
Seita.2G266300 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 36679190-36689189 Setaria italica
Seita.2G266300 10.0kb downstream 10.0kb downstream 17587 true scaffold_2: 36689190-36706776 Setaria italica
Seita.2G266300 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 36696777-36706776 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041471 5273 Angiosperm View MSA
122184978 5267 Panicoideae View MSA
124571751 5269 Grass View MSA
123429135 5275 Viridiplantae View MSA
121347816 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.311        
cufflinks 2.635       High
cufflinks 0.15        
cufflinks 0.142        
cufflinks 0.125        
cufflinks 2.31       High
cufflinks 0.272        
cufflinks 0.327        
cufflinks 0.255        
cufflinks 1.228       High
cufflinks 0.463        
cufflinks 0.045     Low Low
cufflinks 0.204        
cufflinks 0.333        
cufflinks 0.102     Low  
cufflinks 0.132        
cufflinks 0.098     Low  
cufflinks 0.142        
cufflinks 0.261        
cufflinks 0.072     Low Low

0 Strain