Gene : Seita.2G264100 S. italica v2.2
Defline:  (1 of 1) KOG4772 - Predicted tRNA-splicing endonuclease subunit Genomic Order:  2641
Name:  ? Seita.2G264100 Secondary Identifier:  ? PAC:32723263
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G264100 0.5kb upstream 0.5kb upstream 2730 true scaffold_2: 36553593-36556322 Setaria italica
Seita.2G264100 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 36553593-36554092 Setaria italica
Seita.2G264100 0.5kb downstream 0.5kb downstream 2730 true scaffold_2: 36554093-36556822 Setaria italica
Seita.2G264100 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 36556323-36556822 Setaria italica
Seita.2G264100 1.0kb upstream 1.0kb upstream 3230 true scaffold_2: 36553093-36556322 Setaria italica
Seita.2G264100 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 36553093-36554092 Setaria italica
Seita.2G264100 1.0kb downstream 1.0kb downstream 3230 true scaffold_2: 36554093-36557322 Setaria italica
Seita.2G264100 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 36556323-36557322 Setaria italica
Seita.2G264100 2.0kb upstream 2.0kb upstream 4230 true scaffold_2: 36552093-36556322 Setaria italica
Seita.2G264100 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 36552093-36554092 Setaria italica
Seita.2G264100 2.0kb downstream 2.0kb downstream 4230 true scaffold_2: 36554093-36558322 Setaria italica
Seita.2G264100 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 36556323-36558322 Setaria italica
Seita.2G264100 5.0kb upstream 5.0kb upstream 7230 true scaffold_2: 36549093-36556322 Setaria italica
Seita.2G264100 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 36549093-36554092 Setaria italica
Seita.2G264100 5.0kb downstream 5.0kb downstream 7230 true scaffold_2: 36554093-36561322 Setaria italica
Seita.2G264100 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 36556323-36561322 Setaria italica
Seita.2G264100 10.0kb upstream 10.0kb upstream 12230 true scaffold_2: 36544093-36556322 Setaria italica
Seita.2G264100 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 36544093-36554092 Setaria italica
Seita.2G264100 10.0kb downstream 10.0kb downstream 12230 true scaffold_2: 36554093-36566322 Setaria italica
Seita.2G264100 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 36556323-36566322 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199042 5267 Panicoideae View MSA
124569312 5269 Grass View MSA
122051332 5273 Angiosperm View MSA
121351548 5274 Embryophyte View MSA
123382220 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.623        
cufflinks 1.968        
cufflinks 0.061     Low Low
cufflinks 0.023     Low Low
cufflinks 0.017     Low Low
cufflinks 1.773        
cufflinks 0.437        
cufflinks 1.283        
cufflinks 0.569        
cufflinks 2.088        
cufflinks 0.687        
cufflinks 1.362        
cufflinks 1.101        
cufflinks 0.217        
cufflinks 1.363        
cufflinks 0.296        
cufflinks 2.458       High
cufflinks 0.092     Low  
cufflinks 0.034     Low Low
cufflinks 1.997        

0 Strain