Gene : Seita.2G266400 S. italica v2.2
Defline:  (1 of 1) PF14968 - Coiled coil protein 84 (CCDC84) Genomic Order:  2664
Name:  ? Seita.2G266400 Secondary Identifier:  ? PAC:32718024
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G266400 0.5kb upstream 0.5kb upstream 3958 true scaffold_2: 36701463-36705420 Setaria italica
Seita.2G266400 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 36701463-36701962 Setaria italica
Seita.2G266400 0.5kb downstream 0.5kb downstream 3958 true scaffold_2: 36701963-36705920 Setaria italica
Seita.2G266400 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 36705421-36705920 Setaria italica
Seita.2G266400 1.0kb upstream 1.0kb upstream 4458 true scaffold_2: 36700963-36705420 Setaria italica
Seita.2G266400 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 36700963-36701962 Setaria italica
Seita.2G266400 1.0kb downstream 1.0kb downstream 4458 true scaffold_2: 36701963-36706420 Setaria italica
Seita.2G266400 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 36705421-36706420 Setaria italica
Seita.2G266400 2.0kb upstream 2.0kb upstream 5458 true scaffold_2: 36699963-36705420 Setaria italica
Seita.2G266400 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 36699963-36701962 Setaria italica
Seita.2G266400 2.0kb downstream 2.0kb downstream 5458 true scaffold_2: 36701963-36707420 Setaria italica
Seita.2G266400 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 36705421-36707420 Setaria italica
Seita.2G266400 5.0kb upstream 5.0kb upstream 8458 true scaffold_2: 36696963-36705420 Setaria italica
Seita.2G266400 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 36696963-36701962 Setaria italica
Seita.2G266400 5.0kb downstream 5.0kb downstream 8458 true scaffold_2: 36701963-36710420 Setaria italica
Seita.2G266400 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 36705421-36710420 Setaria italica
Seita.2G266400 10.0kb upstream 10.0kb upstream 13458 true scaffold_2: 36691963-36705420 Setaria italica
Seita.2G266400 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 36691963-36701962 Setaria italica
Seita.2G266400 10.0kb downstream 10.0kb downstream 13458 true scaffold_2: 36701963-36715420 Setaria italica
Seita.2G266400 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 36705421-36715420 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191260 5267 Panicoideae View MSA
124576144 5269 Grass View MSA
122044332 5273 Angiosperm View MSA
121347668 5274 Embryophyte View MSA
123380595 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.744        
cufflinks 3.276        
cufflinks 3.342        
cufflinks 2.665        
cufflinks 1.955       Low
cufflinks 3.246        
cufflinks 2.525        
cufflinks 2.198        
cufflinks 1.642       Low
cufflinks 2.666        
cufflinks 2.458        
cufflinks 3.329        
cufflinks 2.26        
cufflinks 2.356        
cufflinks 2.308        
cufflinks 4.612       High
cufflinks 3.225        
cufflinks 6.272       High
cufflinks 2.501        
cufflinks 2.506        

0 Strain