Gene : Seita.2G270600 S. italica v2.2
Defline:  (1 of 2) PTHR19316:SF6 - NUCLEOTIDE EXCHANGE FACTOR SIL1 Genomic Order:  2706
Name:  ? Seita.2G270600 Secondary Identifier:  ? PAC:32721700
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G270600 0.5kb upstream 0.5kb upstream 4721 true scaffold_2: 37092492-37097212 Setaria italica
Seita.2G270600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 37092492-37092991 Setaria italica
Seita.2G270600 0.5kb downstream 0.5kb downstream 4721 true scaffold_2: 37092992-37097712 Setaria italica
Seita.2G270600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 37097213-37097712 Setaria italica
Seita.2G270600 1.0kb upstream 1.0kb upstream 5221 true scaffold_2: 37091992-37097212 Setaria italica
Seita.2G270600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 37091992-37092991 Setaria italica
Seita.2G270600 1.0kb downstream 1.0kb downstream 5221 true scaffold_2: 37092992-37098212 Setaria italica
Seita.2G270600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 37097213-37098212 Setaria italica
Seita.2G270600 2.0kb upstream 2.0kb upstream 6221 true scaffold_2: 37090992-37097212 Setaria italica
Seita.2G270600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 37090992-37092991 Setaria italica
Seita.2G270600 2.0kb downstream 2.0kb downstream 6221 true scaffold_2: 37092992-37099212 Setaria italica
Seita.2G270600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 37097213-37099212 Setaria italica
Seita.2G270600 5.0kb upstream 5.0kb upstream 9221 true scaffold_2: 37087992-37097212 Setaria italica
Seita.2G270600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 37087992-37092991 Setaria italica
Seita.2G270600 5.0kb downstream 5.0kb downstream 9221 true scaffold_2: 37092992-37102212 Setaria italica
Seita.2G270600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 37097213-37102212 Setaria italica
Seita.2G270600 10.0kb upstream 10.0kb upstream 14221 true scaffold_2: 37082992-37097212 Setaria italica
Seita.2G270600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 37082992-37092991 Setaria italica
Seita.2G270600 10.0kb downstream 10.0kb downstream 14221 true scaffold_2: 37092992-37107212 Setaria italica
Seita.2G270600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 37097213-37107212 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185991 5267 Panicoideae View MSA
124569076 5269 Grass View MSA
122044070 5273 Angiosperm View MSA
121347280 5274 Embryophyte View MSA
123426029 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.467        
cufflinks 4.466       High
cufflinks 1.532       Low
cufflinks 1.38       Low
cufflinks 1.369       Low
cufflinks 3.918        
cufflinks 2.643        
cufflinks 2.785        
cufflinks 2.294        
cufflinks 3.841        
cufflinks 2.844        
cufflinks 4.679       High
cufflinks 2.4        
cufflinks 1.817       Low
cufflinks 4.279        
cufflinks 2.285        
cufflinks 3.715        
cufflinks 5.223       High
cufflinks 1.923        
cufflinks 4.164        

0 Strain