Gene : Seita.2G272500 S. italica v2.2
Defline:  (1 of 1) PTHR11599:SF5 - PROTEASOME SUBUNIT BETA TYPE-4 Genomic Order:  2725
Name:  ? Seita.2G272500 Secondary Identifier:  ? PAC:32722732
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G272500 0.5kb upstream 0.5kb upstream 3060 true scaffold_2: 37221890-37224949 Setaria italica
Seita.2G272500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 37224450-37224949 Setaria italica
Seita.2G272500 0.5kb downstream 0.5kb downstream 3060 true scaffold_2: 37221390-37224449 Setaria italica
Seita.2G272500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 37221390-37221889 Setaria italica
Seita.2G272500 1.0kb upstream 1.0kb upstream 3560 true scaffold_2: 37221890-37225449 Setaria italica
Seita.2G272500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 37224450-37225449 Setaria italica
Seita.2G272500 1.0kb downstream 1.0kb downstream 3560 true scaffold_2: 37220890-37224449 Setaria italica
Seita.2G272500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 37220890-37221889 Setaria italica
Seita.2G272500 2.0kb upstream 2.0kb upstream 4560 true scaffold_2: 37221890-37226449 Setaria italica
Seita.2G272500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 37224450-37226449 Setaria italica
Seita.2G272500 2.0kb downstream 2.0kb downstream 4560 true scaffold_2: 37219890-37224449 Setaria italica
Seita.2G272500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 37219890-37221889 Setaria italica
Seita.2G272500 5.0kb upstream 5.0kb upstream 7560 true scaffold_2: 37221890-37229449 Setaria italica
Seita.2G272500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 37224450-37229449 Setaria italica
Seita.2G272500 5.0kb downstream 5.0kb downstream 7560 true scaffold_2: 37216890-37224449 Setaria italica
Seita.2G272500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 37216890-37221889 Setaria italica
Seita.2G272500 10.0kb upstream 10.0kb upstream 12560 true scaffold_2: 37221890-37234449 Setaria italica
Seita.2G272500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 37224450-37234449 Setaria italica
Seita.2G272500 10.0kb downstream 10.0kb downstream 12560 true scaffold_2: 37211890-37224449 Setaria italica
Seita.2G272500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 37211890-37221889 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186667 5267 Panicoideae View MSA
124580646 5269 Grass View MSA
122044971 5273 Angiosperm View MSA
121346476 5274 Embryophyte View MSA
123423883 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 40.62     High  
cufflinks 62.279     High  
cufflinks 26.989     High Low
cufflinks 30.998     High  
cufflinks 26.734     High Low
cufflinks 59.8     High  
cufflinks 36.43     High  
cufflinks 55.751     High  
cufflinks 40.414     High  
cufflinks 62.86     High  
cufflinks 49.951     High  
cufflinks 75.72     High High
cufflinks 77.418     High High
cufflinks 31.398     High  
cufflinks 84.917     High High
cufflinks 20.995     High Low
cufflinks 88.4     High High
cufflinks 32.409     High  
cufflinks 33.259     High  
cufflinks 88.641     High High

0 Strain