Gene : Seita.2G354500 S. italica v2.2
Defline:  (1 of 2) PTHR10457:SF4 - MEVALONATE KINASE Genomic Order:  3545
Name:  ? Seita.2G354500 Secondary Identifier:  ? PAC:32722064
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5910 Setaria italica pathologic  
Sitalica PWY-922 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G354500 0.5kb upstream 0.5kb upstream 2882 true scaffold_2: 43406627-43409508 Setaria italica
Seita.2G354500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 43409009-43409508 Setaria italica
Seita.2G354500 0.5kb downstream 0.5kb downstream 2882 true scaffold_2: 43406127-43409008 Setaria italica
Seita.2G354500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 43406127-43406626 Setaria italica
Seita.2G354500 1.0kb upstream 1.0kb upstream 3382 true scaffold_2: 43406627-43410008 Setaria italica
Seita.2G354500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 43409009-43410008 Setaria italica
Seita.2G354500 1.0kb downstream 1.0kb downstream 3382 true scaffold_2: 43405627-43409008 Setaria italica
Seita.2G354500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 43405627-43406626 Setaria italica
Seita.2G354500 2.0kb upstream 2.0kb upstream 4382 true scaffold_2: 43406627-43411008 Setaria italica
Seita.2G354500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 43409009-43411008 Setaria italica
Seita.2G354500 2.0kb downstream 2.0kb downstream 4382 true scaffold_2: 43404627-43409008 Setaria italica
Seita.2G354500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 43404627-43406626 Setaria italica
Seita.2G354500 5.0kb upstream 5.0kb upstream 7382 true scaffold_2: 43406627-43414008 Setaria italica
Seita.2G354500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 43409009-43414008 Setaria italica
Seita.2G354500 5.0kb downstream 5.0kb downstream 7382 true scaffold_2: 43401627-43409008 Setaria italica
Seita.2G354500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 43401627-43406626 Setaria italica
Seita.2G354500 10.0kb upstream 10.0kb upstream 12382 true scaffold_2: 43406627-43419008 Setaria italica
Seita.2G354500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 43409009-43419008 Setaria italica
Seita.2G354500 10.0kb downstream 10.0kb downstream 12382 true scaffold_2: 43396627-43409008 Setaria italica
Seita.2G354500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 43396627-43406626 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041242 5273 Angiosperm View MSA
122179800 5267 Panicoideae View MSA
124569052 5269 Grass View MSA
121345229 5274 Embryophyte View MSA
123380177 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.883     High  
cufflinks 21.778     High  
cufflinks 6.167       Low
cufflinks 5.388       Low
cufflinks 4.375       Low
cufflinks 18.445     High  
cufflinks 12.933        
cufflinks 14.973     High  
cufflinks 8.827        
cufflinks 14.631        
cufflinks 16.905     High  
cufflinks 27.975     High High
cufflinks 15.587     High  
cufflinks 9.561        
cufflinks 23.59     High High
cufflinks 5.2       Low
cufflinks 30.564     High High
cufflinks 8.006        
cufflinks 8.58        
cufflinks 32.257     High High

0 Strain