Gene : Seita.2G355800 S. italica v2.2
Defline:  (1 of 1) PTHR13832:SF193 - PROTEIN PHOSPHATASE 2C 1-RELATED Genomic Order:  3558
Name:  ? Seita.2G355800 Secondary Identifier:  ? PAC:32721036
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G355800 0.5kb upstream 0.5kb upstream 4574 true scaffold_2: 43489018-43493591 Setaria italica
Seita.2G355800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 43493092-43493591 Setaria italica
Seita.2G355800 0.5kb downstream 0.5kb downstream 4574 true scaffold_2: 43488518-43493091 Setaria italica
Seita.2G355800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 43488518-43489017 Setaria italica
Seita.2G355800 1.0kb upstream 1.0kb upstream 5074 true scaffold_2: 43489018-43494091 Setaria italica
Seita.2G355800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 43493092-43494091 Setaria italica
Seita.2G355800 1.0kb downstream 1.0kb downstream 5074 true scaffold_2: 43488018-43493091 Setaria italica
Seita.2G355800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 43488018-43489017 Setaria italica
Seita.2G355800 2.0kb upstream 2.0kb upstream 6074 true scaffold_2: 43489018-43495091 Setaria italica
Seita.2G355800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 43493092-43495091 Setaria italica
Seita.2G355800 2.0kb downstream 2.0kb downstream 6074 true scaffold_2: 43487018-43493091 Setaria italica
Seita.2G355800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 43487018-43489017 Setaria italica
Seita.2G355800 5.0kb upstream 5.0kb upstream 9074 true scaffold_2: 43489018-43498091 Setaria italica
Seita.2G355800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 43493092-43498091 Setaria italica
Seita.2G355800 5.0kb downstream 5.0kb downstream 9074 true scaffold_2: 43484018-43493091 Setaria italica
Seita.2G355800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 43484018-43489017 Setaria italica
Seita.2G355800 10.0kb upstream 10.0kb upstream 14074 true scaffold_2: 43489018-43503091 Setaria italica
Seita.2G355800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 43493092-43503091 Setaria italica
Seita.2G355800 10.0kb downstream 10.0kb downstream 14074 true scaffold_2: 43479018-43493091 Setaria italica
Seita.2G355800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 43479018-43489017 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027541 5273 Angiosperm View MSA
122175814 5267 Panicoideae View MSA
124571275 5269 Grass View MSA
121350683 5274 Embryophyte View MSA
123426661 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.233        
cufflinks 5.986        
cufflinks 1.908       Low
cufflinks 2.036       Low
cufflinks 2.722       Low
cufflinks 6.534        
cufflinks 4.979        
cufflinks 2.989        
cufflinks 2.939       Low
cufflinks 8.408        
cufflinks 9.066        
cufflinks 7.031        
cufflinks 9.896       High
cufflinks 4.062        
cufflinks 8.86        
cufflinks 3.883        
cufflinks 8.887        
cufflinks 9.162        
cufflinks 2.635       Low
cufflinks 9.54       High

0 Strain