Gene : Seita.2G361100 S. italica v2.2
Defline:  (1 of 2) PTHR20978:SF0 - SPLICING FACTOR 3B SUBUNIT 5 Genomic Order:  3611
Name:  ? Seita.2G361100 Secondary Identifier:  ? PAC:32721092
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G361100 0.5kb upstream 0.5kb upstream 4650 true scaffold_2: 43824549-43829198 Setaria italica
Seita.2G361100 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 43828699-43829198 Setaria italica
Seita.2G361100 0.5kb downstream 0.5kb downstream 4650 true scaffold_2: 43824049-43828698 Setaria italica
Seita.2G361100 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 43824049-43824548 Setaria italica
Seita.2G361100 1.0kb upstream 1.0kb upstream 5150 true scaffold_2: 43824549-43829698 Setaria italica
Seita.2G361100 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 43828699-43829698 Setaria italica
Seita.2G361100 1.0kb downstream 1.0kb downstream 5150 true scaffold_2: 43823549-43828698 Setaria italica
Seita.2G361100 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 43823549-43824548 Setaria italica
Seita.2G361100 2.0kb upstream 2.0kb upstream 6150 true scaffold_2: 43824549-43830698 Setaria italica
Seita.2G361100 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 43828699-43830698 Setaria italica
Seita.2G361100 2.0kb downstream 2.0kb downstream 6150 true scaffold_2: 43822549-43828698 Setaria italica
Seita.2G361100 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 43822549-43824548 Setaria italica
Seita.2G361100 5.0kb upstream 5.0kb upstream 9150 true scaffold_2: 43824549-43833698 Setaria italica
Seita.2G361100 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 43828699-43833698 Setaria italica
Seita.2G361100 5.0kb downstream 5.0kb downstream 9150 true scaffold_2: 43819549-43828698 Setaria italica
Seita.2G361100 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 43819549-43824548 Setaria italica
Seita.2G361100 10.0kb upstream 10.0kb upstream 14150 true scaffold_2: 43824549-43838698 Setaria italica
Seita.2G361100 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 43828699-43838698 Setaria italica
Seita.2G361100 10.0kb downstream 10.0kb downstream 14150 true scaffold_2: 43814549-43828698 Setaria italica
Seita.2G361100 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 43814549-43824548 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027648 5273 Angiosperm View MSA
122199156 5267 Panicoideae View MSA
124576348 5269 Grass View MSA
123428927 5275 Viridiplantae View MSA
121347588 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.009        
cufflinks 6.545        
cufflinks 2.99       Low
cufflinks 2.463       Low
cufflinks 2.375       Low
cufflinks 6.923        
cufflinks 4.12        
cufflinks 7.003        
cufflinks 4.967        
cufflinks 10.05       High
cufflinks 4.644        
cufflinks 6.795        
cufflinks 6.171        
cufflinks 5.121        
cufflinks 6.118        
cufflinks 3.034       Low
cufflinks 9.072       High
cufflinks 2.464       Low
cufflinks 4.001        
cufflinks 7.441        

0 Strain