Gene : Seita.2G365000 S. italica v2.2
Defline:  (1 of 2) PTHR22600//PTHR22600:SF14 - BETA-HEXOSAMINIDASE Genomic Order:  3650
Name:  ? Seita.2G365000 Secondary Identifier:  ? PAC:32719170
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6902 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G365000 0.5kb upstream 0.5kb upstream 2942 true scaffold_2: 44048972-44051913 Setaria italica
Seita.2G365000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 44051414-44051913 Setaria italica
Seita.2G365000 0.5kb downstream 0.5kb downstream 2942 true scaffold_2: 44048472-44051413 Setaria italica
Seita.2G365000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 44048472-44048971 Setaria italica
Seita.2G365000 1.0kb upstream 1.0kb upstream 3442 true scaffold_2: 44048972-44052413 Setaria italica
Seita.2G365000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 44051414-44052413 Setaria italica
Seita.2G365000 1.0kb downstream 1.0kb downstream 3442 true scaffold_2: 44047972-44051413 Setaria italica
Seita.2G365000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 44047972-44048971 Setaria italica
Seita.2G365000 2.0kb upstream 2.0kb upstream 4442 true scaffold_2: 44048972-44053413 Setaria italica
Seita.2G365000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 44051414-44053413 Setaria italica
Seita.2G365000 2.0kb downstream 2.0kb downstream 4442 true scaffold_2: 44046972-44051413 Setaria italica
Seita.2G365000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 44046972-44048971 Setaria italica
Seita.2G365000 5.0kb upstream 5.0kb upstream 7442 true scaffold_2: 44048972-44056413 Setaria italica
Seita.2G365000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 44051414-44056413 Setaria italica
Seita.2G365000 5.0kb downstream 5.0kb downstream 7442 true scaffold_2: 44043972-44051413 Setaria italica
Seita.2G365000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 44043972-44048971 Setaria italica
Seita.2G365000 10.0kb upstream 10.0kb upstream 12442 true scaffold_2: 44048972-44061413 Setaria italica
Seita.2G365000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 44051414-44061413 Setaria italica
Seita.2G365000 10.0kb downstream 10.0kb downstream 12442 true scaffold_2: 44038972-44051413 Setaria italica
Seita.2G365000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 44038972-44048971 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184041 5267 Panicoideae View MSA
124576076 5269 Grass View MSA
122047899 5273 Angiosperm View MSA
121347698 5274 Embryophyte View MSA
123428053 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.164        
cufflinks 0.419       High
cufflinks 0.054     Low Low
cufflinks 0.121        
cufflinks 0.313        
cufflinks 0.492       High
cufflinks 0.418       High
cufflinks 0.271        
cufflinks 0.488       High
cufflinks 0.412       High
cufflinks 0.369        
cufflinks 0.11     Low  
cufflinks 0.152     Low  
cufflinks 0.15        
cufflinks 0.097     Low  
cufflinks 0.049     Low Low
cufflinks 0.147        
cufflinks 0.03     Low Low
cufflinks 0.066     Low Low
cufflinks 0.276        

0 Strain