Gene : Seita.2G367900 S. italica v2.2
Defline:  (1 of 2) PTHR31580:SF5 - FILAMENT-LIKE PLANT PROTEIN 3 Genomic Order:  3679
Name:  ? Seita.2G367900 Secondary Identifier:  ? PAC:32723068
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G367900 0.5kb upstream 0.5kb upstream 3728 true scaffold_2: 44202871-44206598 Setaria italica
Seita.2G367900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 44206099-44206598 Setaria italica
Seita.2G367900 0.5kb downstream 0.5kb downstream 3728 true scaffold_2: 44202371-44206098 Setaria italica
Seita.2G367900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 44202371-44202870 Setaria italica
Seita.2G367900 1.0kb upstream 1.0kb upstream 4228 true scaffold_2: 44202871-44207098 Setaria italica
Seita.2G367900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 44206099-44207098 Setaria italica
Seita.2G367900 1.0kb downstream 1.0kb downstream 4228 true scaffold_2: 44201871-44206098 Setaria italica
Seita.2G367900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 44201871-44202870 Setaria italica
Seita.2G367900 2.0kb upstream 2.0kb upstream 5228 true scaffold_2: 44202871-44208098 Setaria italica
Seita.2G367900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 44206099-44208098 Setaria italica
Seita.2G367900 2.0kb downstream 2.0kb downstream 5228 true scaffold_2: 44200871-44206098 Setaria italica
Seita.2G367900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 44200871-44202870 Setaria italica
Seita.2G367900 5.0kb upstream 5.0kb upstream 8228 true scaffold_2: 44202871-44211098 Setaria italica
Seita.2G367900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 44206099-44211098 Setaria italica
Seita.2G367900 5.0kb downstream 5.0kb downstream 8228 true scaffold_2: 44197871-44206098 Setaria italica
Seita.2G367900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 44197871-44202870 Setaria italica
Seita.2G367900 10.0kb upstream 10.0kb upstream 13228 true scaffold_2: 44202871-44216098 Setaria italica
Seita.2G367900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 44206099-44216098 Setaria italica
Seita.2G367900 10.0kb downstream 10.0kb downstream 13228 true scaffold_2: 44192871-44206098 Setaria italica
Seita.2G367900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 44192871-44202870 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183068 5267 Panicoideae View MSA
124589908 5269 Grass View MSA
122043487 5273 Angiosperm View MSA
121310135 5274 Embryophyte View MSA
123347707 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.089     Low  
cufflinks 0.216       High
cufflinks 0.086        
cufflinks 0.137        
cufflinks 0.137        
cufflinks 0.225       High
cufflinks 0.152        
cufflinks 0.068     Low  
cufflinks 0.06     Low  
cufflinks 0.119     Low  
cufflinks 0.098     Low  
cufflinks 0.057     Low  
cufflinks 0.125     Low  
cufflinks 0.078     Low  
cufflinks 0.14        
cufflinks 0.031     Low Low
cufflinks 0.038     Low Low
cufflinks 0.012     Low Low
cufflinks 0.225       High
cufflinks 0.074     Low  

0 Strain