Gene : Seita.2G368300 S. italica v2.2
Defline:  (1 of 2) PTHR11093:SF2 - RUVB-LIKE 2 Genomic Order:  3683
Name:  ? Seita.2G368300 Secondary Identifier:  ? PAC:32720428
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G368300 0.5kb upstream 0.5kb upstream 3953 true scaffold_2: 44240014-44243966 Setaria italica
Seita.2G368300 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 44240014-44240513 Setaria italica
Seita.2G368300 0.5kb downstream 0.5kb downstream 3953 true scaffold_2: 44240514-44244466 Setaria italica
Seita.2G368300 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 44243967-44244466 Setaria italica
Seita.2G368300 1.0kb upstream 1.0kb upstream 4453 true scaffold_2: 44239514-44243966 Setaria italica
Seita.2G368300 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 44239514-44240513 Setaria italica
Seita.2G368300 1.0kb downstream 1.0kb downstream 4453 true scaffold_2: 44240514-44244966 Setaria italica
Seita.2G368300 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 44243967-44244966 Setaria italica
Seita.2G368300 2.0kb upstream 2.0kb upstream 5453 true scaffold_2: 44238514-44243966 Setaria italica
Seita.2G368300 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 44238514-44240513 Setaria italica
Seita.2G368300 2.0kb downstream 2.0kb downstream 5453 true scaffold_2: 44240514-44245966 Setaria italica
Seita.2G368300 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 44243967-44245966 Setaria italica
Seita.2G368300 5.0kb upstream 5.0kb upstream 8453 true scaffold_2: 44235514-44243966 Setaria italica
Seita.2G368300 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 44235514-44240513 Setaria italica
Seita.2G368300 5.0kb downstream 5.0kb downstream 8453 true scaffold_2: 44240514-44248966 Setaria italica
Seita.2G368300 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 44243967-44248966 Setaria italica
Seita.2G368300 10.0kb upstream 10.0kb upstream 13453 true scaffold_2: 44230514-44243966 Setaria italica
Seita.2G368300 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 44230514-44240513 Setaria italica
Seita.2G368300 10.0kb downstream 10.0kb downstream 13453 true scaffold_2: 44240514-44253966 Setaria italica
Seita.2G368300 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 44243967-44253966 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177089 5267 Panicoideae View MSA
124584257 5269 Grass View MSA
122045825 5273 Angiosperm View MSA
121346627 5274 Embryophyte View MSA
123423891 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.827        
cufflinks 6.79       High
cufflinks 0.959        
cufflinks 0.098       Low
cufflinks 0.311       Low
cufflinks 6.468       High
cufflinks 2.393        
cufflinks 4.433        
cufflinks 2.883        
cufflinks 3.984        
cufflinks 3.535        
cufflinks 2.863        
cufflinks 2.19        
cufflinks 2.418        
cufflinks 4.471        
cufflinks 1.054        
cufflinks 4.817        
cufflinks 1.267        
cufflinks 0.54       Low
cufflinks 5.071        

0 Strain