Gene : Seita.2G366600 S. italica v2.2
Defline:  (1 of 1) PTHR21649:SF13 - LHCA2 PROTEIN Genomic Order:  3666
Name:  ? Seita.2G366600 Secondary Identifier:  ? PAC:32722194
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G366600 0.5kb upstream 0.5kb upstream 1903 true scaffold_2: 44125472-44127374 Setaria italica
Seita.2G366600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 44125472-44125971 Setaria italica
Seita.2G366600 0.5kb downstream 0.5kb downstream 1903 true scaffold_2: 44125972-44127874 Setaria italica
Seita.2G366600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 44127375-44127874 Setaria italica
Seita.2G366600 1.0kb upstream 1.0kb upstream 2403 true scaffold_2: 44124972-44127374 Setaria italica
Seita.2G366600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 44124972-44125971 Setaria italica
Seita.2G366600 1.0kb downstream 1.0kb downstream 2403 true scaffold_2: 44125972-44128374 Setaria italica
Seita.2G366600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 44127375-44128374 Setaria italica
Seita.2G366600 2.0kb upstream 2.0kb upstream 3403 true scaffold_2: 44123972-44127374 Setaria italica
Seita.2G366600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 44123972-44125971 Setaria italica
Seita.2G366600 2.0kb downstream 2.0kb downstream 3403 true scaffold_2: 44125972-44129374 Setaria italica
Seita.2G366600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 44127375-44129374 Setaria italica
Seita.2G366600 5.0kb upstream 5.0kb upstream 6403 true scaffold_2: 44120972-44127374 Setaria italica
Seita.2G366600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 44120972-44125971 Setaria italica
Seita.2G366600 5.0kb downstream 5.0kb downstream 6403 true scaffold_2: 44125972-44132374 Setaria italica
Seita.2G366600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 44127375-44132374 Setaria italica
Seita.2G366600 10.0kb upstream 10.0kb upstream 11403 true scaffold_2: 44115972-44127374 Setaria italica
Seita.2G366600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 44115972-44125971 Setaria italica
Seita.2G366600 10.0kb downstream 10.0kb downstream 11403 true scaffold_2: 44125972-44137374 Setaria italica
Seita.2G366600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 44127375-44137374 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186656 5267 Panicoideae View MSA
124586394 5269 Grass View MSA
122046380 5273 Angiosperm View MSA
121344826 5274 Embryophyte View MSA
123425939 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 45.344     High  
cufflinks 185.2     High  
cufflinks 867.388     High  
cufflinks 1104.376     High  
cufflinks 1811.457     High  
cufflinks 134.313     High  
cufflinks 1174.647     High  
cufflinks 1568.148     High  
cufflinks 980.497     High  
cufflinks 24.328     High  
cufflinks 16.871     High  
cufflinks 0.012     Low Low
cufflinks 4.912        
cufflinks 342.681     High  
cufflinks 1.67       Low
cufflinks 760.396     High  
cufflinks 0.106     Low Low
cufflinks 25.808     High  
cufflinks 848.277     High  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain