Gene : Seita.2G369900 S. italica v2.2
Defline:  (1 of 29) PF03000 - NPH3 family (NPH3) Genomic Order:  3699
Name:  ? Seita.2G369900 Secondary Identifier:  ? PAC:32721173
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G369900 0.5kb upstream 0.5kb upstream 3733 true scaffold_2: 44394037-44397769 Setaria italica
Seita.2G369900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 44394037-44394536 Setaria italica
Seita.2G369900 0.5kb downstream 0.5kb downstream 3733 true scaffold_2: 44394537-44398269 Setaria italica
Seita.2G369900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 44397770-44398269 Setaria italica
Seita.2G369900 1.0kb upstream 1.0kb upstream 4233 true scaffold_2: 44393537-44397769 Setaria italica
Seita.2G369900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 44393537-44394536 Setaria italica
Seita.2G369900 1.0kb downstream 1.0kb downstream 4233 true scaffold_2: 44394537-44398769 Setaria italica
Seita.2G369900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 44397770-44398769 Setaria italica
Seita.2G369900 2.0kb upstream 2.0kb upstream 5233 true scaffold_2: 44392537-44397769 Setaria italica
Seita.2G369900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 44392537-44394536 Setaria italica
Seita.2G369900 2.0kb downstream 2.0kb downstream 5233 true scaffold_2: 44394537-44399769 Setaria italica
Seita.2G369900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 44397770-44399769 Setaria italica
Seita.2G369900 5.0kb upstream 5.0kb upstream 8233 true scaffold_2: 44389537-44397769 Setaria italica
Seita.2G369900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 44389537-44394536 Setaria italica
Seita.2G369900 5.0kb downstream 5.0kb downstream 8233 true scaffold_2: 44394537-44402769 Setaria italica
Seita.2G369900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 44397770-44402769 Setaria italica
Seita.2G369900 10.0kb upstream 10.0kb upstream 13233 true scaffold_2: 44384537-44397769 Setaria italica
Seita.2G369900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 44384537-44394536 Setaria italica
Seita.2G369900 10.0kb downstream 10.0kb downstream 13233 true scaffold_2: 44394537-44407769 Setaria italica
Seita.2G369900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 44397770-44407769 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189551 5267 Panicoideae View MSA
124577006 5269 Grass View MSA
122044122 5273 Angiosperm View MSA
121348430 5274 Embryophyte View MSA
123380863 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.895        
cufflinks 0.738        
cufflinks 0.115       Low
cufflinks 0.102       Low
cufflinks 0.091       Low
cufflinks 0.725        
cufflinks 0.51        
cufflinks 0.507        
cufflinks 0.112       Low
cufflinks 4.468        
cufflinks 2.948        
cufflinks 24.445     High High
cufflinks 9.72       High
cufflinks 0.988        
cufflinks 9.998       High
cufflinks 0.366        
cufflinks 11.745       High
cufflinks 6.793        
cufflinks 1.7        
cufflinks 11.276       High

0 Strain