Gene : Seita.2G370900 S. italica v2.2
Genomic Order:  3709 Name:  ? Seita.2G370900
Secondary Identifier:  ? PAC:32718154
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G370900 0.5kb upstream 0.5kb upstream 1611 true scaffold_2: 44454400-44456010 Setaria italica
Seita.2G370900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 44455511-44456010 Setaria italica
Seita.2G370900 0.5kb downstream 0.5kb downstream 1611 true scaffold_2: 44453900-44455510 Setaria italica
Seita.2G370900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 44453900-44454399 Setaria italica
Seita.2G370900 1.0kb upstream 1.0kb upstream 2111 true scaffold_2: 44454400-44456510 Setaria italica
Seita.2G370900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 44455511-44456510 Setaria italica
Seita.2G370900 1.0kb downstream 1.0kb downstream 2111 true scaffold_2: 44453400-44455510 Setaria italica
Seita.2G370900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 44453400-44454399 Setaria italica
Seita.2G370900 2.0kb upstream 2.0kb upstream 3111 true scaffold_2: 44454400-44457510 Setaria italica
Seita.2G370900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 44455511-44457510 Setaria italica
Seita.2G370900 2.0kb downstream 2.0kb downstream 3111 true scaffold_2: 44452400-44455510 Setaria italica
Seita.2G370900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 44452400-44454399 Setaria italica
Seita.2G370900 5.0kb upstream 5.0kb upstream 6111 true scaffold_2: 44454400-44460510 Setaria italica
Seita.2G370900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 44455511-44460510 Setaria italica
Seita.2G370900 5.0kb downstream 5.0kb downstream 6111 true scaffold_2: 44449400-44455510 Setaria italica
Seita.2G370900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 44449400-44454399 Setaria italica
Seita.2G370900 10.0kb upstream 10.0kb upstream 11111 true scaffold_2: 44454400-44465510 Setaria italica
Seita.2G370900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 44455511-44465510 Setaria italica
Seita.2G370900 10.0kb downstream 10.0kb downstream 11111 true scaffold_2: 44444400-44455510 Setaria italica
Seita.2G370900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 44444400-44454399 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178601 5267 Panicoideae View MSA
124569308 5269 Grass View MSA
122046210 5273 Angiosperm View MSA
121310574 5274 Embryophyte View MSA
123348023 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.651        
cufflinks 0.284        
cufflinks 0.509        
cufflinks 0.585        
cufflinks 0.606        
cufflinks 0.262        
cufflinks 0.065     Low Low
cufflinks 0.98        
cufflinks 0.254        
cufflinks 4.922       High
cufflinks 0.855        
cufflinks 10.169       High
cufflinks 9.992       High
cufflinks 0.764        
cufflinks 4.992       High
cufflinks 0.07     Low Low
cufflinks 5.136       High
cufflinks 0.379        
cufflinks 0.46        
cufflinks 3.667        

0 Strain