Gene : Seita.2G373000 S. italica v2.2
Defline:  (1 of 2) PTHR12354//PTHR12354:SF10 - INTERFERON-RELATED DEVELOPMENTAL REGULATOR Genomic Order:  3730
Name:  ? Seita.2G373000 Secondary Identifier:  ? PAC:32722388
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G373000 0.5kb upstream 0.5kb upstream 5405 true scaffold_2: 44613344-44618748 Setaria italica
Seita.2G373000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 44613344-44613843 Setaria italica
Seita.2G373000 0.5kb downstream 0.5kb downstream 5405 true scaffold_2: 44613844-44619248 Setaria italica
Seita.2G373000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 44618749-44619248 Setaria italica
Seita.2G373000 1.0kb upstream 1.0kb upstream 5905 true scaffold_2: 44612844-44618748 Setaria italica
Seita.2G373000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 44612844-44613843 Setaria italica
Seita.2G373000 1.0kb downstream 1.0kb downstream 5905 true scaffold_2: 44613844-44619748 Setaria italica
Seita.2G373000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 44618749-44619748 Setaria italica
Seita.2G373000 2.0kb upstream 2.0kb upstream 6905 true scaffold_2: 44611844-44618748 Setaria italica
Seita.2G373000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 44611844-44613843 Setaria italica
Seita.2G373000 2.0kb downstream 2.0kb downstream 6905 true scaffold_2: 44613844-44620748 Setaria italica
Seita.2G373000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 44618749-44620748 Setaria italica
Seita.2G373000 5.0kb upstream 5.0kb upstream 9905 true scaffold_2: 44608844-44618748 Setaria italica
Seita.2G373000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 44608844-44613843 Setaria italica
Seita.2G373000 5.0kb downstream 5.0kb downstream 9905 true scaffold_2: 44613844-44623748 Setaria italica
Seita.2G373000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 44618749-44623748 Setaria italica
Seita.2G373000 10.0kb upstream 10.0kb upstream 14905 true scaffold_2: 44603844-44618748 Setaria italica
Seita.2G373000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 44603844-44613843 Setaria italica
Seita.2G373000 10.0kb downstream 10.0kb downstream 14905 true scaffold_2: 44613844-44628748 Setaria italica
Seita.2G373000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 44618749-44628748 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195662 5267 Panicoideae View MSA
124575322 5269 Grass View MSA
122043831 5273 Angiosperm View MSA
121349485 5274 Embryophyte View MSA
123428444 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.984        
cufflinks 12.42        
cufflinks 11.398     High  
cufflinks 9.318       Low
cufflinks 6.933       Low
cufflinks 14.623     High  
cufflinks 14.565     High  
cufflinks 9.47        
cufflinks 8.26       Low
cufflinks 10.258        
cufflinks 13.147        
cufflinks 25.929     High High
cufflinks 11.875        
cufflinks 17.461     High  
cufflinks 14.195     High  
cufflinks 15.034     High  
cufflinks 17.267     High  
cufflinks 13.529     High  
cufflinks 16.743     High  
cufflinks 29.26     High High

0 Strain