Gene : Seita.2G376100 S. italica v2.2
Genomic Order:  3761 Name:  ? Seita.2G376100
Secondary Identifier:  ? PAC:32719967
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G376100 0.5kb upstream 0.5kb upstream 3518 true scaffold_2: 44831911-44835428 Setaria italica
Seita.2G376100 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 44834929-44835428 Setaria italica
Seita.2G376100 0.5kb downstream 0.5kb downstream 3518 true scaffold_2: 44831411-44834928 Setaria italica
Seita.2G376100 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 44831411-44831910 Setaria italica
Seita.2G376100 1.0kb upstream 1.0kb upstream 4018 true scaffold_2: 44831911-44835928 Setaria italica
Seita.2G376100 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 44834929-44835928 Setaria italica
Seita.2G376100 1.0kb downstream 1.0kb downstream 4018 true scaffold_2: 44830911-44834928 Setaria italica
Seita.2G376100 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 44830911-44831910 Setaria italica
Seita.2G376100 2.0kb upstream 2.0kb upstream 5018 true scaffold_2: 44831911-44836928 Setaria italica
Seita.2G376100 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 44834929-44836928 Setaria italica
Seita.2G376100 2.0kb downstream 2.0kb downstream 5018 true scaffold_2: 44829911-44834928 Setaria italica
Seita.2G376100 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 44829911-44831910 Setaria italica
Seita.2G376100 5.0kb upstream 5.0kb upstream 8018 true scaffold_2: 44831911-44839928 Setaria italica
Seita.2G376100 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 44834929-44839928 Setaria italica
Seita.2G376100 5.0kb downstream 5.0kb downstream 8018 true scaffold_2: 44826911-44834928 Setaria italica
Seita.2G376100 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 44826911-44831910 Setaria italica
Seita.2G376100 10.0kb upstream 10.0kb upstream 13018 true scaffold_2: 44831911-44844928 Setaria italica
Seita.2G376100 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 44834929-44844928 Setaria italica
Seita.2G376100 10.0kb downstream 10.0kb downstream 13018 true scaffold_2: 44821911-44834928 Setaria italica
Seita.2G376100 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 44821911-44831910 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191014 5267 Panicoideae View MSA
124571493 5269 Grass View MSA
122050366 5273 Angiosperm View MSA
121311873 5274 Embryophyte View MSA
123349108 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.197        
cufflinks 0.209        
cufflinks 0.322       High
cufflinks 0.356       High
cufflinks 0.304        
cufflinks 0.24        
cufflinks 0.289        
cufflinks 0.367       High
cufflinks 0.203        
cufflinks 0.277     Low  
cufflinks 0.181       Low
cufflinks 0.174       Low
cufflinks 0.203        
cufflinks 0.323       High
cufflinks 0.222        
cufflinks 0.322       High
cufflinks 0.228        
cufflinks 0.207        
cufflinks 0.292        
cufflinks 0.202        

0 Strain