Gene : Seita.2G374500 S. italica v2.2
Defline:  (1 of 170) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  3745
Name:  ? Seita.2G374500 Secondary Identifier:  ? PAC:32719780
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G374500 0.5kb upstream 0.5kb upstream 3225 true scaffold_2: 44741995-44745219 Setaria italica
Seita.2G374500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 44741995-44742494 Setaria italica
Seita.2G374500 0.5kb downstream 0.5kb downstream 3225 true scaffold_2: 44742495-44745719 Setaria italica
Seita.2G374500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 44745220-44745719 Setaria italica
Seita.2G374500 1.0kb upstream 1.0kb upstream 3725 true scaffold_2: 44741495-44745219 Setaria italica
Seita.2G374500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 44741495-44742494 Setaria italica
Seita.2G374500 1.0kb downstream 1.0kb downstream 3725 true scaffold_2: 44742495-44746219 Setaria italica
Seita.2G374500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 44745220-44746219 Setaria italica
Seita.2G374500 2.0kb upstream 2.0kb upstream 4725 true scaffold_2: 44740495-44745219 Setaria italica
Seita.2G374500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 44740495-44742494 Setaria italica
Seita.2G374500 2.0kb downstream 2.0kb downstream 4725 true scaffold_2: 44742495-44747219 Setaria italica
Seita.2G374500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 44745220-44747219 Setaria italica
Seita.2G374500 5.0kb upstream 5.0kb upstream 7725 true scaffold_2: 44737495-44745219 Setaria italica
Seita.2G374500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 44737495-44742494 Setaria italica
Seita.2G374500 5.0kb downstream 5.0kb downstream 7725 true scaffold_2: 44742495-44750219 Setaria italica
Seita.2G374500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 44745220-44750219 Setaria italica
Seita.2G374500 10.0kb upstream 10.0kb upstream 12725 true scaffold_2: 44732495-44745219 Setaria italica
Seita.2G374500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 44732495-44742494 Setaria italica
Seita.2G374500 10.0kb downstream 10.0kb downstream 12725 true scaffold_2: 44742495-44755219 Setaria italica
Seita.2G374500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 44745220-44755219 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185641 5267 Panicoideae View MSA
124587536 5269 Grass View MSA
122051295 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121349652 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.007        
cufflinks 3.644        
cufflinks 3.265        
cufflinks 1.224        
cufflinks 7.337       High
cufflinks 3.518        
cufflinks 5.995       High
cufflinks 7.423       High
cufflinks 15.273     High High
cufflinks 0.639       Low
cufflinks 1.38        
cufflinks 0.478       Low
cufflinks 0.687       Low
cufflinks 5.981       High
cufflinks 0.839        
cufflinks 4.28        
cufflinks 0.527       Low
cufflinks 1.319        
cufflinks 1.104        
cufflinks 0.799        

0 Strain