Gene : Seita.2G375200 S. italica v2.2
Defline:  (1 of 7) PF07899 - Frigida-like protein (Frigida) Genomic Order:  3752
Name:  ? Seita.2G375200 Secondary Identifier:  ? PAC:32721260
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G375200 0.5kb upstream 0.5kb upstream 5373 true scaffold_2: 44795601-44800973 Setaria italica
Seita.2G375200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 44800474-44800973 Setaria italica
Seita.2G375200 0.5kb downstream 0.5kb downstream 5373 true scaffold_2: 44795101-44800473 Setaria italica
Seita.2G375200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 44795101-44795600 Setaria italica
Seita.2G375200 1.0kb upstream 1.0kb upstream 5873 true scaffold_2: 44795601-44801473 Setaria italica
Seita.2G375200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 44800474-44801473 Setaria italica
Seita.2G375200 1.0kb downstream 1.0kb downstream 5873 true scaffold_2: 44794601-44800473 Setaria italica
Seita.2G375200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 44794601-44795600 Setaria italica
Seita.2G375200 2.0kb upstream 2.0kb upstream 6873 true scaffold_2: 44795601-44802473 Setaria italica
Seita.2G375200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 44800474-44802473 Setaria italica
Seita.2G375200 2.0kb downstream 2.0kb downstream 6873 true scaffold_2: 44793601-44800473 Setaria italica
Seita.2G375200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 44793601-44795600 Setaria italica
Seita.2G375200 5.0kb upstream 5.0kb upstream 9873 true scaffold_2: 44795601-44805473 Setaria italica
Seita.2G375200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 44800474-44805473 Setaria italica
Seita.2G375200 5.0kb downstream 5.0kb downstream 9873 true scaffold_2: 44790601-44800473 Setaria italica
Seita.2G375200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 44790601-44795600 Setaria italica
Seita.2G375200 10.0kb upstream 10.0kb upstream 14873 true scaffold_2: 44795601-44810473 Setaria italica
Seita.2G375200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 44800474-44810473 Setaria italica
Seita.2G375200 10.0kb downstream 10.0kb downstream 14873 true scaffold_2: 44785601-44800473 Setaria italica
Seita.2G375200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 44785601-44795600 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176026 5267 Panicoideae View MSA
124579706 5269 Grass View MSA
122049415 5273 Angiosperm View MSA
121351127 5274 Embryophyte View MSA
123382017 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.311        
cufflinks 9.179       High
cufflinks 6.136        
cufflinks 5.684       Low
cufflinks 5.31       Low
cufflinks 10.052       High
cufflinks 6.216        
cufflinks 7.375        
cufflinks 7.179        
cufflinks 7.272        
cufflinks 7.207        
cufflinks 8.659       High
cufflinks 6.611        
cufflinks 6.165        
cufflinks 7.855        
cufflinks 5.779       Low
cufflinks 8.337        
cufflinks 8.82       High
cufflinks 5.944       Low
cufflinks 8.98       High

0 Strain