Gene : Seita.2G375800 S. italica v2.2
Defline:  (1 of 1) PTHR34362:SF1 - WPP DOMAIN-CONTAINING PROTEIN 1-RELATED Genomic Order:  3758
Name:  ? Seita.2G375800 Secondary Identifier:  ? PAC:32720039
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G375800 0.5kb upstream 0.5kb upstream 2992 true scaffold_2: 44821596-44824587 Setaria italica
Seita.2G375800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 44821596-44822095 Setaria italica
Seita.2G375800 0.5kb downstream 0.5kb downstream 2992 true scaffold_2: 44822096-44825087 Setaria italica
Seita.2G375800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 44824588-44825087 Setaria italica
Seita.2G375800 1.0kb upstream 1.0kb upstream 3492 true scaffold_2: 44821096-44824587 Setaria italica
Seita.2G375800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 44821096-44822095 Setaria italica
Seita.2G375800 1.0kb downstream 1.0kb downstream 3492 true scaffold_2: 44822096-44825587 Setaria italica
Seita.2G375800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 44824588-44825587 Setaria italica
Seita.2G375800 2.0kb upstream 2.0kb upstream 4492 true scaffold_2: 44820096-44824587 Setaria italica
Seita.2G375800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 44820096-44822095 Setaria italica
Seita.2G375800 2.0kb downstream 2.0kb downstream 4492 true scaffold_2: 44822096-44826587 Setaria italica
Seita.2G375800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 44824588-44826587 Setaria italica
Seita.2G375800 5.0kb upstream 5.0kb upstream 7492 true scaffold_2: 44817096-44824587 Setaria italica
Seita.2G375800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 44817096-44822095 Setaria italica
Seita.2G375800 5.0kb downstream 5.0kb downstream 7492 true scaffold_2: 44822096-44829587 Setaria italica
Seita.2G375800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 44824588-44829587 Setaria italica
Seita.2G375800 10.0kb upstream 10.0kb upstream 12492 true scaffold_2: 44812096-44824587 Setaria italica
Seita.2G375800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 44812096-44822095 Setaria italica
Seita.2G375800 10.0kb downstream 10.0kb downstream 12492 true scaffold_2: 44822096-44834587 Setaria italica
Seita.2G375800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 44824588-44834587 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183126 5267 Panicoideae View MSA
124586668 5269 Grass View MSA
122045089 5273 Angiosperm View MSA
121310396 5274 Embryophyte View MSA
123347890 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.703        
cufflinks 1.281        
cufflinks 0.466       Low
cufflinks 0.315       Low
cufflinks 0.249       Low
cufflinks 1.84       High
cufflinks 0.931        
cufflinks 1.33        
cufflinks 0.576        
cufflinks 2.282       High
cufflinks 0.671        
cufflinks 1.082        
cufflinks 0.876        
cufflinks 0.849        
cufflinks 0.87        
cufflinks 0.518        
cufflinks 1.059        
cufflinks 1.094        
cufflinks 0.879        
cufflinks 1.323        

0 Strain