Gene : Seita.2G378500 S. italica v2.2
Defline:  (1 of 1) PTHR13748:SF31 - COBW DOMAIN-CONTAINING PROTEIN 1 Genomic Order:  3785
Name:  ? Seita.2G378500 Secondary Identifier:  ? PAC:32719808
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G378500 0.5kb upstream 0.5kb upstream 5330 true scaffold_2: 44972714-44978043 Setaria italica
Seita.2G378500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 44972714-44973213 Setaria italica
Seita.2G378500 0.5kb downstream 0.5kb downstream 5330 true scaffold_2: 44973214-44978543 Setaria italica
Seita.2G378500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 44978044-44978543 Setaria italica
Seita.2G378500 1.0kb upstream 1.0kb upstream 5830 true scaffold_2: 44972214-44978043 Setaria italica
Seita.2G378500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 44972214-44973213 Setaria italica
Seita.2G378500 1.0kb downstream 1.0kb downstream 5830 true scaffold_2: 44973214-44979043 Setaria italica
Seita.2G378500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 44978044-44979043 Setaria italica
Seita.2G378500 2.0kb upstream 2.0kb upstream 6830 true scaffold_2: 44971214-44978043 Setaria italica
Seita.2G378500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 44971214-44973213 Setaria italica
Seita.2G378500 2.0kb downstream 2.0kb downstream 6830 true scaffold_2: 44973214-44980043 Setaria italica
Seita.2G378500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 44978044-44980043 Setaria italica
Seita.2G378500 5.0kb upstream 5.0kb upstream 9830 true scaffold_2: 44968214-44978043 Setaria italica
Seita.2G378500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 44968214-44973213 Setaria italica
Seita.2G378500 5.0kb downstream 5.0kb downstream 9830 true scaffold_2: 44973214-44983043 Setaria italica
Seita.2G378500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 44978044-44983043 Setaria italica
Seita.2G378500 10.0kb upstream 10.0kb upstream 14830 true scaffold_2: 44963214-44978043 Setaria italica
Seita.2G378500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 44963214-44973213 Setaria italica
Seita.2G378500 10.0kb downstream 10.0kb downstream 14830 true scaffold_2: 44973214-44988043 Setaria italica
Seita.2G378500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 44978044-44988043 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188705 5267 Panicoideae View MSA
124570550 5269 Grass View MSA
122044727 5273 Angiosperm View MSA
121345063 5274 Embryophyte View MSA
123428327 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.255       High
cufflinks 9.046        
cufflinks 9.81        
cufflinks 10.571        
cufflinks 10.616        
cufflinks 8.973        
cufflinks 11.123        
cufflinks 7.542       Low
cufflinks 9.991        
cufflinks 6.891       Low
cufflinks 9.681        
cufflinks 11.159        
cufflinks 9.769        
cufflinks 9.991        
cufflinks 6.7       Low
cufflinks 14.923     High High
cufflinks 12.45        
cufflinks 14.523     High High
cufflinks 11.305     High  
cufflinks 10.07        

0 Strain