Gene : Seita.2G382200 S. italica v2.2
Defline:  (1 of 1) 6.3.2.12 - Dihydrofolate synthase / H(2)-folate synthetase Genomic Order:  3822
Name:  ? Seita.2G382200 Secondary Identifier:  ? PAC:32719901
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6612 Setaria italica pathologic  
Sitalica PWY-6614 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G382200 0.5kb upstream 0.5kb upstream 6112 true scaffold_2: 45197629-45203740 Setaria italica
Seita.2G382200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 45203241-45203740 Setaria italica
Seita.2G382200 0.5kb downstream 0.5kb downstream 6112 true scaffold_2: 45197129-45203240 Setaria italica
Seita.2G382200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 45197129-45197628 Setaria italica
Seita.2G382200 1.0kb upstream 1.0kb upstream 6612 true scaffold_2: 45197629-45204240 Setaria italica
Seita.2G382200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 45203241-45204240 Setaria italica
Seita.2G382200 1.0kb downstream 1.0kb downstream 6612 true scaffold_2: 45196629-45203240 Setaria italica
Seita.2G382200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 45196629-45197628 Setaria italica
Seita.2G382200 2.0kb upstream 2.0kb upstream 7612 true scaffold_2: 45197629-45205240 Setaria italica
Seita.2G382200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 45203241-45205240 Setaria italica
Seita.2G382200 2.0kb downstream 2.0kb downstream 7612 true scaffold_2: 45195629-45203240 Setaria italica
Seita.2G382200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 45195629-45197628 Setaria italica
Seita.2G382200 5.0kb upstream 5.0kb upstream 10612 true scaffold_2: 45197629-45208240 Setaria italica
Seita.2G382200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 45203241-45208240 Setaria italica
Seita.2G382200 5.0kb downstream 5.0kb downstream 10612 true scaffold_2: 45192629-45203240 Setaria italica
Seita.2G382200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 45192629-45197628 Setaria italica
Seita.2G382200 10.0kb upstream 10.0kb upstream 15612 true scaffold_2: 45197629-45213240 Setaria italica
Seita.2G382200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 45203241-45213240 Setaria italica
Seita.2G382200 10.0kb downstream 10.0kb downstream 15612 true scaffold_2: 45187629-45203240 Setaria italica
Seita.2G382200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 45187629-45197628 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179347 5267 Panicoideae View MSA
124568279 5269 Grass View MSA
122043688 5273 Angiosperm View MSA
121344520 5274 Embryophyte View MSA
123426614 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.703        
cufflinks 2.255        
cufflinks 2.214        
cufflinks 2.306        
cufflinks 2.187        
cufflinks 2.132        
cufflinks 2.81       High
cufflinks 2.519        
cufflinks 3.14       High
cufflinks 2.963       High
cufflinks 2.51        
cufflinks 2.078       Low
cufflinks 2.503        
cufflinks 2.551        
cufflinks 2.409        
cufflinks 2.368        
cufflinks 2.127        
cufflinks 2.347        
cufflinks 1.937       Low
cufflinks 2.337        

0 Strain